Analysis of interatomic Contacts of Structural Units in PDB entry:
8JSF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JSF entry

There are 2 chains in PDB entry 8JSF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 7GLN 300
B
 GLY 0HIS 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8JSF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 18Right-handed alpha
Helix 2
AA2
A
82 86Right-handed 310
Helix 3
AA3
A
105 112Right-handed 310
Helix 4
AA4
A
114 136Right-handed alpha
Helix 5
AA5
A
158 179Right-handed alpha
Helix 6
AA6
A
183 188Right-handed alpha
Helix 7
AA7
A
203 206Right-handed 310
Helix 8
AA8
A
224 235Right-handed alpha
Helix 9
AA9
A
247 253Right-handed 310
Helix 10
AB1
A
278 281Right-handed 310
Helix 11
AB2
A
290 297Right-handed alpha
Helix 12
AB3
B
1 6Right-handed alpha
Helix 13
AB4
B
6 18Right-handed alpha
Helix 14
AB5
B
70 74Right-handed 310
Helix 15
AB6
B
82 86Right-handed 310
Helix 16
AB7
B
105 112Right-handed 310
Helix 17
AB8
B
114 136Right-handed alpha
Helix 18
AB9
B
158 179Right-handed alpha
Helix 19
AC1
B
183 188Right-handed alpha
Helix 20
AC2
B
203 205Right-handed 310
Helix 21
AC3
B
225 235Right-handed alpha
Helix 22
AC4
B
247 253Right-handed 310
Helix 23
AC5
B
278 281Right-handed 310
Helix 24
AC6
B
290 297Right-handed alpha
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There are 8 sheets in PDB entry 8JSF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
208 214anti-parallel
Strand 3
A
217 223anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 144first strand
Strand 2
A
147 152anti-parallel
Strand 3
A
96 104anti-parallel
Strand 4
A
194 202anti-parallel
Strand 5
A
241 245parallel
Strand 6
A
286 289anti-parallel
Strand 7
A
259 262anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 266first strand
Strand 2
A
269 271anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 277first strand
Strand 2
A
282 284anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 93first strand
Strand 2
B
207 214anti-parallel
Strand 3
B
217 224anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 144first strand
Strand 2
B
147 152anti-parallel
Strand 3
B
96 104anti-parallel
Strand 4
B
194 202anti-parallel
Strand 5
B
241 245parallel
Strand 6
B
286 289anti-parallel
Strand 7
B
259 262anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 266first strand
Strand 2
B
269 271anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 277first strand
Strand 2
B
282 284anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il