Analysis of interatomic Contacts of Structural Units in PDB entry:
8JSG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JSG entry

There are 22 chains in PDB entry 8JSG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	GLU 19	HIS 73
2	ILE 3	LYS 53
3	ASN 2	ALA 86
A	ARG 14	GLN 180
P	LYS 3	VAL 82
g	A 2	U 1540
k	GLU 9	LYS 158
l	ALA 1	LYS 205
n	MET 1	SER 100
p	SER 1	ALA 129
q	ARG 12	VAL 128
t	ALA 1	ALA 123
u	SER 1	ARG 88
y	MET 1	ALA 82
h	GLY 1	ILE 206
m	PRO 1	ALA 151
o	ASN 3	ARG 129
r	ARG 5	LEU 102
s	ALA 1	PRO 114
w	ALA 1	TRP 101
z	ARG 2	ARG 80
j	MET 8	SER 225

There are 89 helices in PDB entry 8JSG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	24	30	Right-handed alpha
Helix 2	AA2	1	40	45	Right-handed alpha
Helix 3	AA3	1	47	64	Right-handed alpha
Helix 4	AA4	2	16	22	Right-handed alpha
Helix 5	AA5	2	24	32	Right-handed alpha
Helix 6	AA6	2	39	44	Right-handed 310
Helix 7	AA7	3	5	41	Right-handed alpha
Helix 8	AA8	3	43	64	Right-handed alpha
Helix 9	AA9	3	69	85	Right-handed alpha
Helix 10	AB1	A	15	19	Right-handed 310
Helix 11	AB2	A	38	50	Right-handed alpha
Helix 12	AB3	A	70	88	Right-handed alpha
Helix 13	AB4	A	103	120	Right-handed alpha
Helix 14	AB5	A	133	136	Right-handed 310
Helix 15	AB6	A	137	151	Right-handed alpha
Helix 16	AB7	k	54	67	Right-handed alpha
Helix 17	AB8	k	110	116	Right-handed alpha
Helix 18	AB9	k	131	136	Right-handed alpha
Helix 19	AC1	k	138	145	Right-handed alpha
Helix 20	AC2	k	148	154	Right-handed alpha
Helix 21	AC3	l	6	15	Right-handed alpha
Helix 22	AC4	l	27	32	Right-handed alpha
Helix 23	AC5	l	48	65	Right-handed alpha
Helix 24	AC6	l	67	81	Right-handed alpha
Helix 25	AC7	l	84	95	Right-handed alpha
Helix 26	AC8	l	96	105	Right-handed alpha
Helix 27	AC9	l	109	119	Right-handed alpha
Helix 28	AD1	l	151	162	Right-handed alpha
Helix 29	AD2	l	195	205	Right-handed alpha
Helix 30	AD3	n	12	16	Right-handed 310
Helix 31	AD4	n	17	32	Right-handed alpha
Helix 32	AD5	n	67	81	Right-handed alpha
Helix 33	AD6	p	4	20	Right-handed alpha
Helix 34	AD7	p	29	43	Right-handed alpha
Helix 35	AD8	p	93	98	Right-handed 310
Helix 36	AD9	p	111	119	Right-handed alpha
Helix 37	AE1	q	47	50	Right-handed 310
Helix 38	AE2	q	53	57	Right-handed 310
Helix 39	AE3	q	58	74	Right-handed alpha
Helix 40	AE4	q	75	77	Right-handed 310
Helix 41	AE5	q	93	100	Right-handed alpha
Helix 42	AE6	t	2	9	Right-handed alpha
Helix 43	AE7	u	3	15	Right-handed alpha
Helix 44	AE8	u	23	43	Right-handed alpha
Helix 45	AE9	u	48	73	Right-handed alpha
Helix 46	AF1	u	74	84	Right-handed alpha
Helix 47	AF2	y	53	64	Right-handed alpha
Helix 48	AF3	y	68	79	Right-handed alpha
Helix 49	AF4	h	5	12	Right-handed alpha
Helix 50	AF5	h	24	46	Right-handed alpha
Helix 51	AF6	h	82	95	Right-handed alpha
Helix 52	AF7	h	107	110	Right-handed 310
Helix 53	AF8	h	111	125	Right-handed alpha
Helix 54	AF9	h	128	143	Right-handed alpha
Helix 55	AG1	m	19	29	Right-handed alpha
Helix 56	AG2	m	35	54	Right-handed alpha
Helix 57	AG3	m	56	69	Right-handed alpha
Helix 58	AG4	m	91	109	Right-handed alpha
Helix 59	AG5	m	114	127	Right-handed alpha
Helix 60	AG6	m	132	144	Right-handed alpha
Helix 61	AG7	m	146	150	Right-handed 310
Helix 62	AG8	o	45	47	Right-handed 310
Helix 63	AG9	o	48	54	Right-handed alpha
Helix 64	AH1	o	71	87	Right-handed alpha
Helix 65	AH2	o	89	100	Right-handed alpha
Helix 66	AH3	r	14	30	Right-handed alpha
Helix 67	AH4	r	80	88	Right-handed alpha
Helix 68	AH5	s	13	21	Right-handed alpha
Helix 69	AH6	s	25	36	Right-handed alpha
Helix 70	AH7	s	48	61	Right-handed alpha
Helix 71	AH8	s	64	81	Right-handed alpha
Helix 72	AH9	s	84	92	Right-handed alpha
Helix 73	AI1	w	2	19	Right-handed alpha
Helix 74	AI2	w	22	31	Right-handed alpha
Helix 75	AI3	w	42	48	Right-handed alpha
Helix 76	AI4	w	56	60	Right-handed 310
Helix 77	AI5	w	80	89	Right-handed alpha
Helix 78	AI6	z	11	25	Right-handed alpha
Helix 79	AI7	z	40	44	Right-handed 310
Helix 80	AI8	j	23	30	Right-handed 310
Helix 81	AI9	j	33	37	Right-handed 310
Helix 82	AJ1	j	41	61	Right-handed alpha
Helix 83	AJ2	j	71	82	Right-handed alpha
Helix 84	AJ3	j	102	121	Right-handed alpha
Helix 85	AJ4	j	130	148	Right-handed alpha
Helix 86	AJ5	j	149	153	Right-handed 310
Helix 87	AJ6	j	168	179	Right-handed alpha
Helix 88	AJ7	j	191	195	Right-handed 310
Helix 89	AJ8	j	205	223	Right-handed alpha

There are 25 sheets in PDB entry 8JSG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	37	first strand
Strand 2	A	24	27	anti-parallel
Strand 3	A	64	66	parallel
Strand 4	A	55	57	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	98	first strand
Strand 2	A	122	128	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	7	10	first strand
Strand 2	P	57	67	anti-parallel
Strand 3	P	70	73	anti-parallel
Strand 4	P	45	46	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	23	26	first strand
Strand 2	P	39	42	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	11	19	first strand
Strand 2	k	32	39	anti-parallel
Strand 3	k	46	52	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	85	88	first strand
Strand 2	k	91	96	anti-parallel
Strand 3	k	122	128	anti-parallel
Strand 4	k	104	105	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	127	128	first strand
Strand 2	l	122	124	anti-parallel
Strand 3	l	143	144	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	3	4	first strand
Strand 2	n	64	65	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	6	10	first strand
Strand 2	n	84	89	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	24	27	first strand
Strand 2	p	57	60	anti-parallel
Strand 3	p	48	51	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	74	76	first strand
Strand 2	p	123	128	anti-parallel
Strand 3	p	100	104	anti-parallel
Strand 4	p	109	110	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	42	45	first strand
Strand 2	q	29	34	anti-parallel
Strand 3	q	19	24	anti-parallel
Strand 4	q	83	86	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	80	81	first strand
Strand 2	q	105	106	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	t	29	31	first strand
Strand 2	t	79	82	anti-parallel
Strand 3	t	95	96	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	t	35	39	first strand
Strand 2	t	49	55	anti-parallel
Strand 3	t	61	65	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	2	5	first strand
Strand 2	y	20	23	anti-parallel
Strand 3	y	34	35	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	38	39	first strand
Strand 2	y	50	51	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	51	55	first strand
Strand 2	h	66	69	anti-parallel
Strand 3	h	101	104	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	163	170	first strand
Strand 2	h	147	154	anti-parallel
Strand 3	h	196	202	anti-parallel
Strand 4	h	181	184	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	15	16	first strand
Strand 2	o	66	67	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	19	21	first strand
Strand 2	o	61	64	anti-parallel
Strand 3	o	28	29	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	70	73	first strand
Strand 2	r	8	12	anti-parallel
Strand 3	r	98	100	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	48	52	first strand
Strand 2	r	62	67	anti-parallel
Strand 3	w	96	98	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	z	30	32	first strand
Strand 2	z	48	51	parallel
Strand 3	z	56	58	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	184	186	first strand
Strand 2	j	198	200	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JSG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JSG