Analysis of interatomic Contacts of Structural Units in PDB entry:
8JSM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JSM entry

There are 6 chains in PDB entry 8JSM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4ASN 1391
B
 HIS 81ILE 340
C
 HIS 81SER 179
D
 SER 82THR 149
E
 ASN 80VAL 146
G
 U 0 G 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 8JSM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 29Right-handed alpha
Helix 2
AA2
A
38 44Right-handed 310
Helix 3
AA3
A
51 55Right-handed 310
Helix 4
AA4
A
56 63Right-handed alpha
Helix 5
AA5
A
76 83Right-handed alpha
Helix 6
AA6
A
99 122Right-handed alpha
Helix 7
AA7
A
132 142Right-handed alpha
Helix 8
AA8
A
145 163Right-handed alpha
Helix 9
AA9
A
206 210Right-handed 310
Helix 10
AB1
A
214 223Right-handed alpha
Helix 11
AB2
A
234 261Right-handed alpha
Helix 12
AB3
A
271 288Right-handed alpha
Helix 13
AB4
A
291 296Right-handed alpha
Helix 14
AB5
A
297 308Right-handed alpha
Helix 15
AB6
A
314 316Right-handed 310
Helix 16
AB7
A
317 334Right-handed alpha
Helix 17
AB8
A
341 348Right-handed alpha
Helix 18
AB9
A
349 357Right-handed alpha
Helix 19
AC1
A
361 369Right-handed alpha
Helix 20
AC2
A
381 391Right-handed alpha
Helix 21
AC3
A
400 422Right-handed alpha
Helix 22
AC4
A
432 436Right-handed 310
Helix 23
AC5
A
438 446Right-handed alpha
Helix 24
AC6
A
458 463Right-handed 310
Helix 25
AC7
A
477 482Right-handed 310
Helix 26
AC8
A
493 497Right-handed 310
Helix 27
AC9
A
499 504Right-handed alpha
Helix 28
AD1
A
515 521Right-handed alpha
Helix 29
AD2
A
527 537Right-handed alpha
Helix 30
AD3
A
538 542Right-handed 310
Helix 31
AD4
A
567 584Right-handed alpha
Helix 32
AD5
A
601 610Right-handed alpha
Helix 33
AD6
A
636 640Right-handed 310
Helix 34
AD7
A
641 656Right-handed alpha
Helix 35
AD8
A
663 669Right-handed alpha
Helix 36
AD9
A
688 692Right-handed 310
Helix 37
AE1
A
712 731Right-handed alpha
Helix 38
AE2
A
759 783Right-handed alpha
Helix 39
AE3
A
815 820Right-handed alpha
Helix 40
AE4
A
832 850Right-handed alpha
Helix 41
AE5
A
854 875Right-handed alpha
Helix 42
AE6
A
884 889Right-handed alpha
Helix 43
AE7
A
895 903Right-handed alpha
Helix 44
AE8
A
916 921Right-handed 310
Helix 45
AE9
A
927 943Right-handed alpha
Helix 46
AF1
A
948 955Right-handed alpha
Helix 47
AF2
A
961 968Right-handed alpha
Helix 48
AF3
A
974 978Right-handed 310
Helix 49
AF4
A
980 994Right-handed alpha
Helix 50
AF5
A
1000 1005Right-handed alpha
Helix 51
AF6
A
1008 1021Right-handed alpha
Helix 52
AF7
A
1027 1036Right-handed alpha
Helix 53
AF8
A
1038 1048Right-handed alpha
Helix 54
AF9
A
1052 1059Right-handed alpha
Helix 55
AG1
A
1059 1064Right-handed alpha
Helix 56
AG2
A
1069 1085Right-handed alpha
Helix 57
AG3
A
1093 1100Right-handed alpha
Helix 58
AG4
A
1105 1117Right-handed alpha
Helix 59
AG5
A
1150 1155Right-handed alpha
Helix 60
AG6
A
1182 1184Right-handed 310
Helix 61
AG7
A
1213 1230Right-handed alpha
Helix 62
AG8
A
1235 1245Right-handed alpha
Helix 63
AG9
A
1254 1259Right-handed alpha
Helix 64
AH1
A
1266 1273Right-handed alpha
Helix 65
AH2
A
1287 1290Right-handed 310
Helix 66
AH3
A
1296 1300Right-handed 310
Helix 67
AH4
A
1315 1331Right-handed alpha
Helix 68
AH5
A
1335 1339Right-handed 310
Helix 69
AH6
B
82 119Right-handed alpha
Helix 70
AH7
B
120 123Right-handed 310
Helix 71
AH8
B
124 149Right-handed alpha
Helix 72
AH9
B
155 165Right-handed alpha
Helix 73
AI1
B
178 187Right-handed alpha
Helix 74
AI2
B
193 205Right-handed alpha
Helix 75
AI3
B
220 232Right-handed alpha
Helix 76
AI4
B
237 254Right-handed alpha
Helix 77
AI5
B
255 270Right-handed alpha
Helix 78
AI6
B
272 284Right-handed alpha
Helix 79
AI7
B
285 288Right-handed 310
Helix 80
AI8
B
299 303Right-handed 310
Helix 81
AI9
C
82 119Right-handed alpha
Helix 82
AJ1
C
120 143Right-handed alpha
Helix 83
AJ2
C
152 164Right-handed alpha
Helix 84
AJ3
D
83 112Right-handed alpha
Helix 85
AJ4
D
113 117Right-handed 310
Helix 86
AJ5
D
118 146Right-handed alpha
Helix 87
AJ6
E
81 117Right-handed alpha
Helix 88
AJ7
E
118 144Right-handed alpha
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There are 8 sheets in PDB entry 8JSM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
227 232parallel
Strand 3
A
189 194anti-parallel
Strand 4
A
180 184anti-parallel
Strand 5
A
173 177anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 399first strand
Strand 2
C
145 148anti-parallel
Strand 3
B
174 177anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
549 552first strand
Strand 2
A
562 565anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
734 740first strand
Strand 2
A
743 749anti-parallel
Strand 3
A
626 632anti-parallel
Strand 4
A
793 795anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
798 801first strand
Strand 2
A
804 807anti-parallel
Strand 3
A
810 811anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1139 1141first strand
Strand 2
A
1343 1348anti-parallel
Strand 3
A
1164 1169anti-parallel
Strand 4
A
1292 1295anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1175 1176first strand
Strand 2
A
1186 1187anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 296first strand
Strand 2
B
327 330parallel
Strand 3
B
334 338anti-parallel
Strand 4
B
311 313anti-parallel
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