Analysis of interatomic Contacts of Structural Units in PDB entry:
8JSP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JSP entry

There are 5 chains in PDB entry 8JSP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 4	PHE 354
B	GLN 13	ASN 340
E	VAL 2	LEU 247
G	GLN 18	ARG 62
R	TYR 35	ILE 415

There are 31 helices in PDB entry 8JSP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	30	Right-handed alpha
Helix 2	AA2	A	45	55	Right-handed alpha
Helix 3	AA3	A	207	211	Right-handed 310
Helix 4	AA4	A	212	216	Right-handed 310
Helix 5	AA5	A	228	232	Right-handed 310
Helix 6	AA6	A	243	255	Right-handed alpha
Helix 7	AA7	A	256	260	Right-handed 310
Helix 8	AA8	A	270	281	Right-handed alpha
Helix 9	AA9	A	295	309	Right-handed alpha
Helix 10	AB1	A	331	351	Right-handed alpha
Helix 11	AB2	B	14	26	Right-handed alpha
Helix 12	AB3	B	29	35	Right-handed alpha
Helix 13	AB4	E	28	32	Right-handed 310
Helix 14	AB5	E	53	56	Right-handed 310
Helix 15	AB6	E	87	91	Right-handed 310
Helix 16	AB7	G	19	24	Right-handed alpha
Helix 17	AB8	G	29	45	Right-handed alpha
Helix 18	AB9	G	46	48	Right-handed 310
Helix 19	AC1	G	55	59	Right-handed 310
Helix 20	AC2	R	36	63	Right-handed alpha
Helix 21	AC3	R	69	99	Right-handed alpha
Helix 22	AC4	R	105	123	Right-handed alpha
Helix 23	AC5	R	124	140	Right-handed alpha
Helix 24	AC6	R	140	147	Right-handed alpha
Helix 25	AC7	R	150	174	Right-handed alpha
Helix 26	AC8	R	192	228	Right-handed alpha
Helix 27	AC9	R	325	357	Right-handed alpha
Helix 28	AD1	R	358	368	Right-handed alpha
Helix 29	AD2	R	369	373	Right-handed 310
Helix 30	AD3	R	378	401	Right-handed alpha
Helix 31	AD4	R	404	415	Right-handed alpha

There are 13 sheets in PDB entry 8JSP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	200	first strand
Strand 2	A	34	40	parallel
Strand 3	A	220	226	parallel
Strand 4	A	263	269	parallel
Strand 5	A	319	320	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	112	first strand
Strand 2	B	124	125	anti-parallel
Strand 3	B	134	135	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	166	168	anti-parallel
Strand 4	B	178	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	278	first strand
Strand 2	B	284	287	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	80	84	anti-parallel
Strand 4	E	68	71	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	11	first strand
Strand 2	E	115	118	parallel
Strand 3	E	92	97	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	142	first strand
Strand 2	E	156	161	anti-parallel
Strand 3	E	211	215	anti-parallel
Strand 4	E	204	208	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	148	first strand
Strand 2	E	244	246	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	194	195	first strand
Strand 2	E	186	190	anti-parallel
Strand 3	E	174	179	anti-parallel
Strand 4	E	226	231	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JSP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JSP