Analysis of interatomic Contacts of Structural Units in PDB entry:
8JSR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JSR entry

There are 6 chains in PDB entry 8JSR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	LEU 37	LEU 338
A	GLY 2	VAL 361
B	GLU 3	SER 342
C	VAL 2	LEU 247
G	THR 6	ARG 62
N	GLN 1	VAL 126

There are 33 helices in PDB entry 8JSR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	39	71	Right-handed alpha
Helix 2	AA2	R	76	95	Right-handed alpha
Helix 3	AA3	R	95	105	Right-handed alpha
Helix 4	AA4	R	112	147	Right-handed alpha
Helix 5	AA5	R	147	155	Right-handed alpha
Helix 6	AA6	R	156	175	Right-handed alpha
Helix 7	AA7	R	177	181	Right-handed alpha
Helix 8	AA8	R	201	208	Right-handed alpha
Helix 9	AA9	R	208	241	Right-handed alpha
Helix 10	AB1	R	258	289	Right-handed alpha
Helix 11	AB2	R	296	325	Right-handed alpha
Helix 12	AB3	R	329	338	Right-handed alpha
Helix 13	AB4	A	6	33	Right-handed alpha
Helix 14	AB5	A	45	54	Right-handed alpha
Helix 15	AB6	A	55	57	Right-handed 310
Helix 16	AB7	A	210	216	Right-handed 310
Helix 17	AB8	A	232	246	Right-handed alpha
Helix 18	AB9	A	260	271	Right-handed alpha
Helix 19	AC1	A	274	278	Right-handed 310
Helix 20	AC2	A	279	283	Right-handed 310
Helix 21	AC3	A	298	319	Right-handed alpha
Helix 22	AC4	A	337	358	Right-handed alpha
Helix 23	AC5	B	4	25	Right-handed alpha
Helix 24	AC6	B	29	34	Right-handed alpha
Helix 25	AC7	C	28	32	Right-handed 310
Helix 26	AC8	C	62	65	Right-handed 310
Helix 27	AC9	C	87	91	Right-handed 310
Helix 28	AD1	C	220	224	Right-handed 310
Helix 29	AD2	G	7	24	Right-handed alpha
Helix 30	AD3	G	29	44	Right-handed alpha
Helix 31	AD4	G	45	48	Right-handed 310
Helix 32	AD5	N	28	32	Right-handed 310
Helix 33	AD6	N	87	91	Right-handed 310

There are 15 sheets in PDB entry 8JSR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	182	186	first strand
Strand 2	R	196	200	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	190	first strand
Strand 2	A	195	201	anti-parallel
Strand 3	A	34	40	parallel
Strand 4	A	220	226	parallel
Strand 5	A	253	259	parallel
Strand 6	A	326	330	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	70	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	217	221	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	303	308	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	69	73	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	115	119	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	33	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	141	first strand
Strand 2	C	155	161	anti-parallel
Strand 3	C	211	216	anti-parallel
Strand 4	C	203	207	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	148	first strand
Strand 2	C	243	246	parallel
Strand 3	C	225	231	anti-parallel
Strand 4	C	174	179	anti-parallel
Strand 5	C	186	190	anti-parallel
Strand 6	C	194	195	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	6	first strand
Strand 2	N	17	25	anti-parallel
Strand 3	N	78	84	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	11	first strand
Strand 2	N	122	125	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JSR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JSR