Analysis of interatomic Contacts of Structural Units in PDB entry:
8JSU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JSU entry

There are 4 chains in PDB entry 8JSU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 39
B	VAL 6	LEU 315
C	GLY -1	ALA 40
D	THR 2	THR 312

There are 35 helices in PDB entry 8JSU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	28	Right-handed alpha
Helix 2	AA2	A	29	37	Right-handed alpha
Helix 3	AA3	B	46	58	Right-handed alpha
Helix 4	AA4	B	62	66	Right-handed 310
Helix 5	AA5	B	87	93	Right-handed alpha
Helix 6	AA6	B	101	106	Right-handed alpha
Helix 7	AA7	B	106	119	Right-handed alpha
Helix 8	AA8	B	120	121	Right-handed 310
Helix 9	AA9	B	122	126	Right-handed 310
Helix 10	AB1	B	135	141	Right-handed alpha
Helix 11	AB2	B	141	154	Right-handed alpha
Helix 12	AB3	B	160	168	Right-handed alpha
Helix 13	AB4	B	168	173	Right-handed alpha
Helix 14	AB5	B	188	190	Right-handed 310
Helix 15	AB6	B	210	230	Right-handed alpha
Helix 16	AB7	B	231	251	Right-handed alpha
Helix 17	AB8	B	255	281	Right-handed alpha
Helix 18	AB9	B	283	306	Right-handed alpha
Helix 19	AC1	B	308	313	Right-handed alpha
Helix 20	AC2	C	2	28	Right-handed alpha
Helix 21	AC3	C	29	37	Right-handed alpha
Helix 22	AC4	D	46	58	Right-handed alpha
Helix 23	AC5	D	87	93	Right-handed alpha
Helix 24	AC6	D	101	119	Right-handed alpha
Helix 25	AC7	D	120	121	Right-handed 310
Helix 26	AC8	D	122	126	Right-handed 310
Helix 27	AC9	D	135	141	Right-handed alpha
Helix 28	AD1	D	141	155	Right-handed alpha
Helix 29	AD2	D	160	168	Right-handed alpha
Helix 30	AD3	D	168	173	Right-handed alpha
Helix 31	AD4	D	188	190	Right-handed 310
Helix 32	AD5	D	210	230	Right-handed alpha
Helix 33	AD6	D	231	251	Right-handed alpha
Helix 34	AD7	D	255	281	Right-handed alpha
Helix 35	AD8	D	283	306	Right-handed alpha

There are 6 sheets in PDB entry 8JSU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	15	first strand
Strand 2	B	21	27	anti-parallel
Strand 3	B	30	36	anti-parallel
Strand 4	B	76	78	anti-parallel
Strand 5	B	70	73	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	183	first strand
Strand 2	B	207	209	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	193	first strand
Strand 2	B	199	200	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	15	first strand
Strand 2	D	21	27	anti-parallel
Strand 3	D	30	36	anti-parallel
Strand 4	D	76	78	anti-parallel
Strand 5	D	70	73	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	181	183	first strand
Strand 2	D	207	209	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	193	first strand
Strand 2	D	199	200	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JSU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JSU