Analysis of interatomic Contacts of Structural Units in PDB entry:
8JSV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JSV entry

There are 10 chains in PDB entry 8JSV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MSE 1	VAL 195
B	MSE 1	VAL 195
C	MSE 1	HIS 202
D	MSE 1	VAL 195
E	MSE 1	VAL 195
F	MSE 1	VAL 195
G	MSE 1	VAL 195
H	MSE 1	VAL 195
I	MSE 1	HIS 203
J	MSE 1	HIS 202

There are 79 helices in PDB entry 8JSV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	30	Right-handed 310
Helix 2	AA2	A	41	51	Right-handed alpha
Helix 3	AA3	A	61	69	Right-handed alpha
Helix 4	AA4	A	70	74	Right-handed 310
Helix 5	AA5	A	78	84	Right-handed alpha
Helix 6	AA6	A	106	116	Right-handed alpha
Helix 7	AA7	A	126	136	Right-handed alpha
Helix 8	AA8	B	26	30	Right-handed 310
Helix 9	AA9	B	36	40	Right-handed 310
Helix 10	AB1	B	41	52	Right-handed alpha
Helix 11	AB2	B	61	69	Right-handed alpha
Helix 12	AB3	B	70	74	Right-handed 310
Helix 13	AB4	B	78	84	Right-handed alpha
Helix 14	AB5	B	106	115	Right-handed alpha
Helix 15	AB6	B	126	136	Right-handed alpha
Helix 16	AB7	C	26	30	Right-handed 310
Helix 17	AB8	C	36	40	Right-handed 310
Helix 18	AB9	C	41	52	Right-handed alpha
Helix 19	AC1	C	61	69	Right-handed alpha
Helix 20	AC2	C	70	75	Right-handed 310
Helix 21	AC3	C	78	84	Right-handed alpha
Helix 22	AC4	C	106	116	Right-handed alpha
Helix 23	AC5	C	126	136	Right-handed alpha
Helix 24	AC6	D	26	30	Right-handed 310
Helix 25	AC7	D	36	40	Right-handed 310
Helix 26	AC8	D	42	52	Right-handed alpha
Helix 27	AC9	D	61	71	Right-handed alpha
Helix 28	AD1	D	72	75	Right-handed 310
Helix 29	AD2	D	78	84	Right-handed alpha
Helix 30	AD3	D	106	116	Right-handed alpha
Helix 31	AD4	D	126	136	Right-handed alpha
Helix 32	AD5	E	26	30	Right-handed 310
Helix 33	AD6	E	36	40	Right-handed 310
Helix 34	AD7	E	43	52	Right-handed alpha
Helix 35	AD8	E	61	69	Right-handed alpha
Helix 36	AD9	E	70	75	Right-handed 310
Helix 37	AE1	E	78	84	Right-handed alpha
Helix 38	AE2	E	106	116	Right-handed alpha
Helix 39	AE3	E	126	136	Right-handed alpha
Helix 40	AE4	F	26	30	Right-handed 310
Helix 41	AE5	F	36	40	Right-handed 310
Helix 42	AE6	F	41	50	Right-handed alpha
Helix 43	AE7	F	61	69	Right-handed alpha
Helix 44	AE8	F	70	75	Right-handed 310
Helix 45	AE9	F	78	84	Right-handed alpha
Helix 46	AF1	F	106	116	Right-handed alpha
Helix 47	AF2	F	126	136	Right-handed alpha
Helix 48	AF3	G	26	30	Right-handed 310
Helix 49	AF4	G	36	40	Right-handed 310
Helix 50	AF5	G	41	52	Right-handed alpha
Helix 51	AF6	G	61	71	Right-handed alpha
Helix 52	AF7	G	72	74	Right-handed 310
Helix 53	AF8	G	78	84	Right-handed alpha
Helix 54	AF9	G	106	116	Right-handed alpha
Helix 55	AG1	G	126	136	Right-handed alpha
Helix 56	AG2	H	26	30	Right-handed 310
Helix 57	AG3	H	36	40	Right-handed 310
Helix 58	AG4	H	41	49	Right-handed alpha
Helix 59	AG5	H	61	69	Right-handed alpha
Helix 60	AG6	H	70	74	Right-handed 310
Helix 61	AG7	H	78	84	Right-handed alpha
Helix 62	AG8	H	106	116	Right-handed alpha
Helix 63	AG9	H	126	136	Right-handed alpha
Helix 64	AH1	I	26	30	Right-handed 310
Helix 65	AH2	I	36	40	Right-handed 310
Helix 66	AH3	I	41	52	Right-handed alpha
Helix 67	AH4	I	61	71	Right-handed alpha
Helix 68	AH5	I	72	75	Right-handed 310
Helix 69	AH6	I	78	84	Right-handed alpha
Helix 70	AH7	I	106	116	Right-handed alpha
Helix 71	AH8	I	126	136	Right-handed alpha
Helix 72	AH9	J	26	30	Right-handed 310
Helix 73	AI1	J	36	40	Right-handed 310
Helix 74	AI2	J	41	52	Right-handed alpha
Helix 75	AI3	J	61	69	Right-handed alpha
Helix 76	AI4	J	70	75	Right-handed 310
Helix 77	AI5	J	78	84	Right-handed alpha
Helix 78	AI6	J	106	116	Right-handed alpha
Helix 79	AI7	J	126	136	Right-handed alpha

There are 10 sheets in PDB entry 8JSV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	104	first strand
Strand 2	A	86	89	parallel
Strand 3	A	56	60	parallel
Strand 4	A	121	123	parallel
Strand 5	A	4	10	parallel
Strand 6	A	141	146	parallel
Strand 7	A	180	186	anti-parallel
Strand 8	A	165	174	anti-parallel
Strand 9	B	149	150	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	150	first strand
Strand 2	B	165	174	anti-parallel
Strand 3	B	180	186	anti-parallel
Strand 4	B	141	147	anti-parallel
Strand 5	B	4	11	parallel
Strand 6	B	121	124	parallel
Strand 7	B	56	60	parallel
Strand 8	B	86	89	parallel
Strand 9	B	101	104	parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	104	first strand
Strand 2	C	86	89	parallel
Strand 3	C	56	60	parallel
Strand 4	C	121	124	parallel
Strand 5	C	4	11	parallel
Strand 6	C	141	147	parallel
Strand 7	C	180	186	anti-parallel
Strand 8	C	165	174	anti-parallel
Strand 9	D	149	150	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	150	first strand
Strand 2	D	165	174	anti-parallel
Strand 3	D	180	186	anti-parallel
Strand 4	D	141	147	anti-parallel
Strand 5	D	4	11	parallel
Strand 6	D	121	124	parallel
Strand 7	D	56	60	parallel
Strand 8	D	86	89	parallel
Strand 9	D	101	104	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	104	first strand
Strand 2	E	86	89	parallel
Strand 3	E	56	60	parallel
Strand 4	E	121	124	parallel
Strand 5	E	4	11	parallel
Strand 6	E	141	147	parallel
Strand 7	E	180	186	anti-parallel
Strand 8	E	167	174	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	101	104	first strand
Strand 2	F	86	89	parallel
Strand 3	F	56	60	parallel
Strand 4	F	121	124	parallel
Strand 5	F	4	11	parallel
Strand 6	F	141	147	parallel
Strand 7	F	180	186	anti-parallel
Strand 8	F	167	174	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	101	104	first strand
Strand 2	G	86	89	parallel
Strand 3	G	56	60	parallel
Strand 4	G	121	124	parallel
Strand 5	G	4	11	parallel
Strand 6	G	141	147	parallel
Strand 7	G	180	186	anti-parallel
Strand 8	G	165	174	anti-parallel
Strand 9	H	149	150	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	149	150	first strand
Strand 2	H	165	174	anti-parallel
Strand 3	H	180	186	anti-parallel
Strand 4	H	141	147	anti-parallel
Strand 5	H	4	11	parallel
Strand 6	H	121	123	parallel
Strand 7	H	56	60	parallel
Strand 8	H	86	89	parallel
Strand 9	H	101	104	parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	101	104	first strand
Strand 2	I	86	89	parallel
Strand 3	I	56	60	parallel
Strand 4	I	121	124	parallel
Strand 5	I	4	11	parallel
Strand 6	I	141	147	parallel
Strand 7	I	180	186	anti-parallel
Strand 8	I	165	174	anti-parallel
Strand 9	J	149	150	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	149	150	first strand
Strand 2	J	165	174	anti-parallel
Strand 3	J	180	186	anti-parallel
Strand 4	J	141	147	anti-parallel
Strand 5	J	4	11	parallel
Strand 6	J	121	124	parallel
Strand 7	J	56	60	parallel
Strand 8	J	86	89	parallel
Strand 9	J	101	104	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JSV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JSV