Analysis of interatomic Contacts of Structural Units in PDB entry:
8JSZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JSZ entry

There are 2 chains in PDB entry 8JSZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0ALA 277
B
 GLY 0ALA 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 8JSZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 6Right-handed 310
Helix 2
AA2
A
7 23Right-handed alpha
Helix 3
AA3
A
35 39Right-handed 310
Helix 4
AA4
A
76 96Right-handed alpha
Helix 5
AA5
A
116 134Right-handed alpha
Helix 6
AA6
A
134 144Right-handed alpha
Helix 7
AA7
A
185 197Right-handed alpha
Helix 8
AA8
A
206 210Right-handed alpha
Helix 9
AA9
A
214 219Right-handed alpha
Helix 10
AB1
A
242 245Right-handed 310
Helix 11
AB2
A
263 274Right-handed alpha
Helix 12
AB3
A
275 277Right-handed 310
Helix 13
AB4
B
2 6Right-handed 310
Helix 14
AB5
B
7 23Right-handed alpha
Helix 15
AB6
B
35 39Right-handed 310
Helix 16
AB7
B
76 96Right-handed alpha
Helix 17
AB8
B
116 134Right-handed alpha
Helix 18
AB9
B
134 144Right-handed alpha
Helix 19
AC1
B
185 197Right-handed alpha
Helix 20
AC2
B
206 210Right-handed alpha
Helix 21
AC3
B
214 219Right-handed alpha
Helix 22
AC4
B
242 245Right-handed 310
Helix 23
AC5
B
263 274Right-handed alpha
Helix 24
AC6
B
275 277Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 8JSZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 29first strand
Strand 2
A
48 64parallel
Strand 3
A
149 164anti-parallel
Strand 4
A
179 184anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 104first strand
Strand 2
A
107 112anti-parallel
Strand 3
A
48 64anti-parallel
Strand 4
A
149 164anti-parallel
Strand 5
A
201 205parallel
Strand 6
A
251 255anti-parallel
Strand 7
A
236 240anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 29first strand
Strand 2
B
48 64parallel
Strand 3
B
149 164anti-parallel
Strand 4
B
179 184anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 104first strand
Strand 2
B
107 112anti-parallel
Strand 3
B
48 64anti-parallel
Strand 4
B
149 164anti-parallel
Strand 5
B
201 205parallel
Strand 6
B
251 255anti-parallel
Strand 7
B
236 240anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il