Analysis of interatomic Contacts of Structural Units in PDB entry:
8JT1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JT1 entry

There are 12 chains in PDB entry 8JT1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 91GLY 622
B
 GLN 91GLY 622
C
 GLY 1PRO 2
C
 GLY 4PRO 5
E
 GLY 1PRO 2
E
 GLY 4PRO 5
F
 GLY 4PRO 5
G
 GLY 1PRO 2
G
 GLY 4PRO 5
I
 GLY 1PRO 2
I
 GLY 4PRO 5
J
 GLY 4PRO 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 8JT1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
93 98Right-handed 310
Helix 2
AA2
A
101 113Right-handed alpha
Helix 3
AA3
A
113 118Right-handed alpha
Helix 4
AA4
A
119 123Right-handed 310
Helix 5
AA5
A
124 132Right-handed alpha
Helix 6
AA6
A
133 150Right-handed alpha
Helix 7
AA7
A
156 176Right-handed alpha
Helix 8
AA8
A
184 199Right-handed alpha
Helix 9
AA9
A
206 223Right-handed alpha
Helix 10
AB1
A
225 228Right-handed 310
Helix 11
AB2
A
229 240Right-handed alpha
Helix 12
AB3
A
243 246Right-handed 310
Helix 13
AB4
A
247 264Right-handed alpha
Helix 14
AB5
A
267 275Right-handed alpha
Helix 15
AB6
A
277 289Right-handed alpha
Helix 16
AB7
A
290 294Right-handed 310
Helix 17
AB8
A
298 312Right-handed alpha
Helix 18
AB9
A
313 315Right-handed 310
Helix 19
AC1
A
320 335Right-handed alpha
Helix 20
AC2
A
341 356Right-handed alpha
Helix 21
AC3
A
357 361Right-handed 310
Helix 22
AC4
A
365 375Right-handed alpha
Helix 23
AC5
A
393 416Right-handed alpha
Helix 24
AC6
A
437 450Right-handed alpha
Helix 25
AC7
A
489 503Right-handed alpha
Helix 26
AC8
A
515 529Right-handed alpha
Helix 27
AC9
A
532 541Right-handed alpha
Helix 28
AD1
A
546 552Right-handed alpha
Helix 29
AD2
A
559 578Right-handed alpha
Helix 30
AD3
A
578 591Right-handed alpha
Helix 31
AD4
A
593 608Right-handed alpha
Helix 32
AD5
A
608 622Right-handed alpha
Helix 33
AD6
B
93 98Right-handed 310
Helix 34
AD7
B
101 113Right-handed alpha
Helix 35
AD8
B
113 118Right-handed alpha
Helix 36
AD9
B
119 123Right-handed 310
Helix 37
AE1
B
124 132Right-handed alpha
Helix 38
AE2
B
133 150Right-handed alpha
Helix 39
AE3
B
156 176Right-handed alpha
Helix 40
AE4
B
184 199Right-handed alpha
Helix 41
AE5
B
206 223Right-handed alpha
Helix 42
AE6
B
225 228Right-handed 310
Helix 43
AE7
B
229 240Right-handed alpha
Helix 44
AE8
B
243 246Right-handed 310
Helix 45
AE9
B
247 264Right-handed alpha
Helix 46
AF1
B
267 274Right-handed alpha
Helix 47
AF2
B
277 290Right-handed alpha
Helix 48
AF3
B
291 294Right-handed 310
Helix 49
AF4
B
298 312Right-handed alpha
Helix 50
AF5
B
313 315Right-handed 310
Helix 51
AF6
B
320 335Right-handed alpha
Helix 52
AF7
B
341 356Right-handed alpha
Helix 53
AF8
B
357 361Right-handed 310
Helix 54
AF9
B
365 375Right-handed alpha
Helix 55
AG1
B
393 416Right-handed alpha
Helix 56
AG2
B
437 450Right-handed alpha
Helix 57
AG3
B
489 503Right-handed alpha
Helix 58
AG4
B
515 529Right-handed alpha
Helix 59
AG5
B
532 541Right-handed alpha
Helix 60
AG6
B
546 552Right-handed alpha
Helix 61
AG7
B
555 558Right-handed 310
Helix 62
AG8
B
559 578Right-handed alpha
Helix 63
AG9
B
578 591Right-handed alpha
Helix 64
AH1
B
593 608Right-handed alpha
Helix 65
AH2
B
608 622Right-handed alpha
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There are 4 sheets in PDB entry 8JT1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 380first strand
Strand 2
A
385 389anti-parallel
Strand 3
A
430 435parallel
Strand 4
A
472 477parallel
Strand 5
A
458 460anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 380first strand
Strand 2
A
385 389anti-parallel
Strand 3
A
430 435parallel
Strand 4
A
472 477parallel
Strand 5
A
487 488anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
377 380first strand
Strand 2
B
385 389anti-parallel
Strand 3
B
430 435parallel
Strand 4
B
472 477parallel
Strand 5
B
458 460anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
377 380first strand
Strand 2
B
385 389anti-parallel
Strand 3
B
430 435parallel
Strand 4
B
472 477parallel
Strand 5
B
487 488anti-parallel
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