Analysis of interatomic Contacts of Structural Units in PDB entry:
8JT7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JT7 entry

There is 1 chain in PDB entry 8JT7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 13ILE 594
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8JT7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 37Right-handed alpha
Helix 2
AA2
A
86 96Right-handed alpha
Helix 3
AA3
A
132 137Right-handed alpha
Helix 4
AA4
A
138 141Right-handed 310
Helix 5
AA5
A
146 150Right-handed 310
Helix 6
AA6
A
153 166Right-handed alpha
Helix 7
AA7
A
168 172Right-handed 310
Helix 8
AA8
A
173 178Right-handed alpha
Helix 9
AA9
A
188 190Right-handed 310
Helix 10
AB1
A
191 200Right-handed alpha
Helix 11
AB2
A
201 212Right-handed alpha
Helix 12
AB3
A
222 227Right-handed alpha
Helix 13
AB4
A
246 257Right-handed alpha
Helix 14
AB5
A
265 268Right-handed 310
Helix 15
AB6
A
323 330Right-handed alpha
Helix 16
AB7
A
332 336Right-handed 310
Helix 17
AB8
A
337 344Right-handed alpha
Helix 18
AB9
A
364 368Right-handed 310
Helix 19
AC1
A
390 392Right-handed 310
Helix 20
AC2
A
409 411Right-handed 310
Helix 21
AC3
A
412 418Right-handed alpha
Helix 22
AC4
A
430 434Right-handed 310
Helix 23
AC5
A
438 442Right-handed 310
Helix 24
AC6
A
451 466Right-handed alpha
Helix 25
AC7
A
499 507Right-handed alpha
Helix 26
AC8
A
529 545Right-handed alpha
Helix 27
AC9
A
578 594Right-handed alpha
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There are 7 sheets in PDB entry 8JT7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
42 45parallel
Strand 3
A
14 19parallel
Strand 4
A
311 321parallel
Strand 5
A
289 299anti-parallel
Strand 6
A
302 305anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 281first strand
Strand 2
A
289 299anti-parallel
Strand 3
A
311 321anti-parallel
Strand 4
A
516 519parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
68 69anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 102first strand
Strand 2
A
239 241anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 130first strand
Strand 2
A
121 124anti-parallel
Strand 3
A
373 376parallel
Strand 4
A
382 388anti-parallel
Strand 5
A
401 407anti-parallel
Strand 6
A
352 359anti-parallel
Strand 7
A
476 482anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 182first strand
Strand 2
A
185 186anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 350first strand
Strand 2
A
491 494anti-parallel
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