Analysis of interatomic Contacts of Structural Units in PDB entry:
8JTJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JTJ entry

There are 4 chains in PDB entry 8JTJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 1076
B
 G 1 G 107
C
 T 1 C 29
D
 G 1 A 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 8JTJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 76Right-handed alpha
Helix 2
AA2
A
81 86Right-handed alpha
Helix 3
AA3
A
87 91Right-handed 310
Helix 4
AA4
A
96 104Right-handed alpha
Helix 5
AA5
A
112 124Right-handed alpha
Helix 6
AA6
A
141 154Right-handed alpha
Helix 7
AA7
A
159 167Right-handed alpha
Helix 8
AA8
A
186 205Right-handed alpha
Helix 9
AA9
A
210 222Right-handed alpha
Helix 10
AB1
A
231 237Right-handed alpha
Helix 11
AB2
A
253 268Right-handed alpha
Helix 12
AB3
A
280 294Right-handed alpha
Helix 13
AB4
A
298 307Right-handed alpha
Helix 14
AB5
A
336 351Right-handed alpha
Helix 15
AB6
A
359 373Right-handed alpha
Helix 16
AB7
A
376 384Right-handed alpha
Helix 17
AB8
A
403 411Right-handed alpha
Helix 18
AB9
A
423 434Right-handed alpha
Helix 19
AC1
A
438 447Right-handed alpha
Helix 20
AC2
A
470 492Right-handed alpha
Helix 21
AC3
A
503 507Right-handed 310
Helix 22
AC4
A
508 537Right-handed alpha
Helix 23
AC5
A
546 556Right-handed alpha
Helix 24
AC6
A
569 573Right-handed 310
Helix 25
AC7
A
604 604Right-handed 310
Helix 26
AC8
A
606 609Right-handed 310
Helix 27
AC9
A
639 646Right-handed alpha
Helix 28
AD1
A
651 664Right-handed alpha
Helix 29
AD2
A
667 679Right-handed alpha
Helix 30
AD3
A
696 707Right-handed alpha
Helix 31
AD4
A
716 718Right-handed 310
Helix 32
AD5
A
719 729Right-handed alpha
Helix 33
AD6
A
731 736Right-handed alpha
Helix 34
AD7
A
737 744Right-handed 310
Helix 35
AD8
A
750 755Right-handed 310
Helix 36
AD9
A
765 774Right-handed alpha
Helix 37
AE1
A
777 786Right-handed alpha
Helix 38
AE2
A
791 796Right-handed alpha
Helix 39
AE3
A
845 849Right-handed 310
Helix 40
AE4
A
862 871Right-handed alpha
Helix 41
AE5
A
878 882Right-handed alpha
Helix 42
AE6
A
945 950Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 8JTJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
692 694first strand
Strand 2
A
496 501parallel
Strand 3
A
3 9parallel
Strand 4
A
13 20anti-parallel
Strand 5
A
25 33anti-parallel
Strand 6
A
804 805parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
418 422anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 389first strand
Strand 2
A
392 393anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
581 582first strand
Strand 2
A
597 598anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
825 826first strand
Strand 2
A
833 839anti-parallel
Strand 3
A
902 908anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
912 914first strand
Strand 2
A
919 921anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
937 944first strand
Strand 2
A
926 934anti-parallel
Strand 3
A
975 980anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1033 1038first strand
Strand 2
A
1022 1027anti-parallel
Strand 3
A
1009 1016anti-parallel
Strand 4
A
985 988anti-parallel
Strand 5
A
1045 1050anti-parallel
Strand 6
A
1056 1057anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
995 998first strand
Strand 2
A
1002 1005anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il