Analysis of interatomic Contacts of Structural Units in PDB entry:
8JTK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JTK entry

There are 2 chains in PDB entry 8JTK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY -1GLY 192
A
 GLY -1LYS 103
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8JTK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
12 16Right-handed 310
Helix 2
AA2
B
23 43Right-handed alpha
Helix 3
AA3
B
67 75Right-handed alpha
Helix 4
AA4
B
85 99Right-handed alpha
Helix 5
AA5
B
120 134Right-handed alpha
Helix 6
AA6
B
149 163Right-handed alpha
Helix 7
AA7
B
179 186Right-handed alpha
Helix 8
AA8
B
187 192Right-handed alpha
Helix 9
AA9
A
19 26Right-handed 310
Helix 10
AB1
A
80 85Right-handed alpha
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There are 2 sheets in PDB entry 8JTK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 65first strand
Strand 2
B
47 52anti-parallel
Strand 3
B
3 9parallel
Strand 4
B
106 113parallel
Strand 5
B
136 142parallel
Strand 6
B
169 172parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
10 17anti-parallel
Strand 3
A
93 99parallel
Strand 4
A
62 67anti-parallel
Strand 5
A
41 43parallel
Strand 6
A
51 54anti-parallel
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