Analysis of interatomic Contacts of Structural Units in PDB entry:
8JTL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JTL entry

There are 4 chains in PDB entry 8JTL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 0GLY 192
B
 PRO 0GLY 192
D
 PRO 0LYS 103
C
 PRO 0LYS 103
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8JTL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 17Right-handed 310
Helix 2
AA2
A
23 43Right-handed alpha
Helix 3
AA3
A
67 74Right-handed alpha
Helix 4
AA4
A
85 101Right-handed alpha
Helix 5
AA5
A
120 134Right-handed alpha
Helix 6
AA6
A
150 163Right-handed alpha
Helix 7
AA7
A
179 186Right-handed alpha
Helix 8
AA8
A
187 192Right-handed alpha
Helix 9
AA9
B
12 17Right-handed 310
Helix 10
AB1
B
23 43Right-handed alpha
Helix 11
AB2
B
67 74Right-handed alpha
Helix 12
AB3
B
85 99Right-handed alpha
Helix 13
AB4
B
120 134Right-handed alpha
Helix 14
AB5
B
149 163Right-handed alpha
Helix 15
AB6
B
179 186Right-handed alpha
Helix 16
AB7
B
187 192Right-handed alpha
Helix 17
AB8
D
19 26Right-handed 310
Helix 18
AB9
D
28 33Right-handed 310
Helix 19
AC1
D
80 85Right-handed alpha
Helix 20
AC2
C
19 26Right-handed 310
Helix 21
AC3
C
28 32Right-handed 310
Helix 22
AC4
C
80 85Right-handed alpha
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There are 3 sheets in PDB entry 8JTL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 65first strand
Strand 2
A
47 52anti-parallel
Strand 3
A
3 9parallel
Strand 4
A
106 113parallel
Strand 5
A
136 143parallel
Strand 6
A
169 173parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 65first strand
Strand 2
B
47 52anti-parallel
Strand 3
B
3 9parallel
Strand 4
B
106 113parallel
Strand 5
B
136 143parallel
Strand 6
B
169 173parallel
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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 54first strand
Strand 2
D
41 43anti-parallel
Strand 3
D
62 67parallel
Strand 4
D
93 99anti-parallel
Strand 5
D
10 17parallel
Strand 6
D
3 7anti-parallel
Strand 7
C
3 7anti-parallel
Strand 8
C
10 17anti-parallel
Strand 9
C
93 99parallel
Strand 10
C
62 67anti-parallel
Strand 11
C
41 43parallel
Strand 12
C
51 54anti-parallel
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