Analysis of interatomic Contacts of Structural Units in PDB entry:
8JTR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JTR entry

There are 2 chains in PDB entry 8JTR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 1076
B
 G 1 C 105
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8JTR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 78Right-handed alpha
Helix 2
AA2
A
81 89Right-handed alpha
Helix 3
AA3
A
96 104Right-handed alpha
Helix 4
AA4
A
110 124Right-handed alpha
Helix 5
AA5
A
142 155Right-handed alpha
Helix 6
AA6
A
159 167Right-handed alpha
Helix 7
AA7
A
168 171Right-handed 310
Helix 8
AA8
A
186 205Right-handed alpha
Helix 9
AA9
A
210 222Right-handed alpha
Helix 10
AB1
A
229 237Right-handed alpha
Helix 11
AB2
A
253 266Right-handed alpha
Helix 12
AB3
A
282 292Right-handed alpha
Helix 13
AB4
A
298 307Right-handed alpha
Helix 14
AB5
A
337 348Right-handed alpha
Helix 15
AB6
A
359 372Right-handed alpha
Helix 16
AB7
A
375 384Right-handed alpha
Helix 17
AB8
A
403 411Right-handed alpha
Helix 18
AB9
A
423 433Right-handed alpha
Helix 19
AC1
A
438 446Right-handed alpha
Helix 20
AC2
A
470 491Right-handed alpha
Helix 21
AC3
A
511 530Right-handed alpha
Helix 22
AC4
A
531 531Right-handed 310
Helix 23
AC5
A
533 536Right-handed 310
Helix 24
AC6
A
546 556Right-handed alpha
Helix 25
AC7
A
568 572Right-handed 310
Helix 26
AC8
A
593 597Right-handed 310
Helix 27
AC9
A
602 609Right-handed alpha
Helix 28
AD1
A
612 617Right-handed alpha
Helix 29
AD2
A
621 634Right-handed alpha
Helix 30
AD3
A
642 647Right-handed alpha
Helix 31
AD4
A
651 663Right-handed alpha
Helix 32
AD5
A
667 680Right-handed alpha
Helix 33
AD6
A
696 707Right-handed alpha
Helix 34
AD7
A
718 729Right-handed alpha
Helix 35
AD8
A
737 743Right-handed alpha
Helix 36
AD9
A
744 746Right-handed 310
Helix 37
AE1
A
765 774Right-handed alpha
Helix 38
AE2
A
777 786Right-handed alpha
Helix 39
AE3
A
791 797Right-handed alpha
Helix 40
AE4
A
859 863Right-handed 310
Helix 41
AE5
A
869 874Right-handed alpha
Helix 42
AE6
A
944 951Right-handed alpha
Helix 43
AE7
A
963 967Right-handed 310
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There are 8 sheets in PDB entry 8JTR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
692 694first strand
Strand 2
A
496 501parallel
Strand 3
A
3 9parallel
Strand 4
A
13 20anti-parallel
Strand 5
A
25 33anti-parallel
Strand 6
A
803 805parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 250first strand
Strand 2
A
418 422anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
578 580first strand
Strand 2
A
599 601anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
825 826first strand
Strand 2
A
833 837anti-parallel
Strand 3
A
904 908anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
912 913first strand
Strand 2
A
920 921anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
937 938first strand
Strand 2
A
928 934anti-parallel
Strand 3
A
942 943anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
937 938first strand
Strand 2
A
928 934anti-parallel
Strand 3
A
975 979anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1033 1037first strand
Strand 2
A
1023 1027anti-parallel
Strand 3
A
1009 1016anti-parallel
Strand 4
A
985 988anti-parallel
Strand 5
A
1046 1049anti-parallel
Strand 6
A
1057 1058anti-parallel
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