Analysis of interatomic Contacts of Structural Units in PDB entry:
8JTY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JTY entry

There are 2 chains in PDB entry 8JTY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 21ALA 520
B
 GLN 3VAL 120
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 8JTY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 33Right-handed alpha
Helix 2
AA2
A
37 41Right-handed 310
Helix 3
AA3
A
54 62Right-handed alpha
Helix 4
AA4
A
67 74Right-handed alpha
Helix 5
AA5
A
104 110Right-handed alpha
Helix 6
AA6
A
133 139Right-handed alpha
Helix 7
AA7
A
141 147Right-handed 310
Helix 8
AA8
A
148 170Right-handed alpha
Helix 9
AA9
A
176 195Right-handed alpha
Helix 10
AB1
A
198 228Right-handed alpha
Helix 11
AB2
A
229 231Right-handed 310
Helix 12
AB3
A
232 258Right-handed alpha
Helix 13
AB4
A
260 277Right-handed alpha
Helix 14
AB5
A
333 338Right-handed 310
Helix 15
AB6
A
342 369Right-handed alpha
Helix 16
AB7
A
374 384Right-handed alpha
Helix 17
AB8
A
386 396Right-handed alpha
Helix 18
AB9
A
403 420Right-handed alpha
Helix 19
AC1
A
430 457Right-handed alpha
Helix 20
AC2
A
458 487Right-handed alpha
Helix 21
AC3
A
494 507Right-handed alpha
Helix 22
AC4
A
509 513Right-handed 310
Helix 23
AC5
B
27 32Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 8JTY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
126 127anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
118 120anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
18 23anti-parallel
Strand 3
B
77 82anti-parallel
Strand 4
B
67 72anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
46 51anti-parallel
Strand 3
B
34 38anti-parallel
Strand 4
B
91 98anti-parallel
Strand 5
B
109 112anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
46 51anti-parallel
Strand 3
B
34 38anti-parallel
Strand 4
B
91 98anti-parallel
Strand 5
B
116 118anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il