Analysis of interatomic Contacts of Structural Units in PDB entry:
8JU5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JU5 entry

There are 4 chains in PDB entry 8JU5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 148TRP 788
D
 VAL 148TRP 788
C
 VAL 148TRP 788
B
 VAL 148TRP 788
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are123 helices in PDB entry 8JU5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
150 161Right-handed alpha
Helix 2
AA2
A
168 176Right-handed alpha
Helix 3
AA3
A
193 201Right-handed alpha
Helix 4
AA4
A
208 220Right-handed alpha
Helix 5
AA5
A
222 227Right-handed alpha
Helix 6
AA6
A
240 248Right-handed alpha
Helix 7
AA7
A
250 260Right-handed alpha
Helix 8
AA8
A
287 295Right-handed alpha
Helix 9
AA9
A
297 306Right-handed alpha
Helix 10
AB1
A
323 332Right-handed alpha
Helix 11
AB2
A
335 356Right-handed alpha
Helix 12
AB3
A
361 365Right-handed 310
Helix 13
AB4
A
372 381Right-handed alpha
Helix 14
AB5
A
382 391Right-handed alpha
Helix 15
AB6
A
432 437Right-handed alpha
Helix 16
AB7
A
444 449Right-handed alpha
Helix 17
AB8
A
455 491Right-handed alpha
Helix 18
AB9
A
504 533Right-handed alpha
Helix 19
AC1
A
550 570Right-handed alpha
Helix 20
AC2
A
573 589Right-handed alpha
Helix 21
AC3
A
590 594Right-handed 310
Helix 22
AC4
A
612 634Right-handed alpha
Helix 23
AC5
A
665 679Right-handed alpha
Helix 24
AC6
A
684 688Right-handed 310
Helix 25
AC7
A
691 718Right-handed alpha
Helix 26
AC8
A
730 746Right-handed alpha
Helix 27
AC9
A
749 756Right-handed alpha
Helix 28
AD1
A
767 771Right-handed 310
Helix 29
AD2
D
150 161Right-handed alpha
Helix 30
AD3
D
168 176Right-handed alpha
Helix 31
AD4
D
193 201Right-handed alpha
Helix 32
AD5
D
208 221Right-handed alpha
Helix 33
AD6
D
222 227Right-handed alpha
Helix 34
AD7
D
240 248Right-handed alpha
Helix 35
AD8
D
250 260Right-handed alpha
Helix 36
AD9
D
275 279Right-handed 310
Helix 37
AE1
D
287 295Right-handed alpha
Helix 38
AE2
D
297 306Right-handed alpha
Helix 39
AE3
D
323 332Right-handed alpha
Helix 40
AE4
D
335 356Right-handed alpha
Helix 41
AE5
D
361 365Right-handed 310
Helix 42
AE6
D
372 381Right-handed alpha
Helix 43
AE7
D
382 391Right-handed alpha
Helix 44
AE8
D
432 439Right-handed alpha
Helix 45
AE9
D
442 444Right-handed 310
Helix 46
AF1
D
445 450Right-handed alpha
Helix 47
AF2
D
452 466Right-handed alpha
Helix 48
AF3
D
466 491Right-handed alpha
Helix 49
AF4
D
504 531Right-handed alpha
Helix 50
AF5
D
532 534Right-handed 310
Helix 51
AF6
D
546 569Right-handed alpha
Helix 52
AF7
D
573 589Right-handed alpha
Helix 53
AF8
D
590 594Right-handed 310
Helix 54
AF9
D
603 609Right-handed alpha
Helix 55
AG1
D
611 636Right-handed alpha
Helix 56
AG2
D
664 679Right-handed alpha
Helix 57
AG3
D
691 723Right-handed alpha
Helix 58
AG4
D
730 747Right-handed alpha
Helix 59
AG5
D
749 756Right-handed alpha
Helix 60
AG6
D
767 771Right-handed 310
Helix 61
AG7
C
150 161Right-handed alpha
Helix 62
AG8
C
168 176Right-handed alpha
Helix 63
AG9
C
182 186Right-handed 310
Helix 64
AH1
C
193 201Right-handed alpha
Helix 65
AH2
C
208 221Right-handed alpha
Helix 66
AH3
C
222 227Right-handed alpha
Helix 67
AH4
C
240 247Right-handed alpha
Helix 68
AH5
C
250 260Right-handed alpha
Helix 69
AH6
C
287 295Right-handed alpha
Helix 70
AH7
C
297 306Right-handed alpha
Helix 71
AH8
C
323 332Right-handed alpha
Helix 72
AH9
C
335 356Right-handed alpha
Helix 73
AI1
C
372 381Right-handed alpha
Helix 74
AI2
C
382 391Right-handed alpha
Helix 75
AI3
C
432 439Right-handed alpha
Helix 76
AI4
C
442 446Right-handed 310
Helix 77
AI5
C
448 451Right-handed 310
Helix 78
AI6
C
452 466Right-handed alpha
Helix 79
AI7
C
466 485Right-handed alpha
Helix 80
AI8
C
506 533Right-handed alpha
Helix 81
AI9
C
550 570Right-handed alpha
Helix 82
AJ1
C
574 590Right-handed alpha
Helix 83
AJ2
C
591 594Right-handed 310
Helix 84
AJ3
C
612 636Right-handed alpha
Helix 85
AJ4
C
665 679Right-handed alpha
Helix 86
AJ5
C
683 688Right-handed 310
Helix 87
AJ6
C
691 718Right-handed alpha
Helix 88
AJ7
C
729 748Right-handed alpha
Helix 89
AJ8
C
749 756Right-handed alpha
Helix 90
AJ9
C
768 770Right-handed 310
Helix 91
AK1
B
150 160Right-handed alpha
Helix 92
AK2
B
168 176Right-handed alpha
Helix 93
AK3
B
193 201Right-handed alpha
Helix 94
AK4
B
208 220Right-handed alpha
Helix 95
AK5
B
222 227Right-handed alpha
Helix 96
AK6
B
240 248Right-handed alpha
Helix 97
AK7
B
250 260Right-handed alpha
Helix 98
AK8
B
275 279Right-handed 310
Helix 99
AK9
B
287 295Right-handed alpha
Helix 100
AL1
B
297 306Right-handed alpha
Helix 101
AL2
B
323 332Right-handed alpha
Helix 102
AL3
B
335 356Right-handed alpha
Helix 103
AL4
B
361 365Right-handed 310
Helix 104
AL5
B
372 381Right-handed alpha
Helix 105
AL6
B
382 391Right-handed alpha
Helix 106
AL7
B
432 439Right-handed alpha
Helix 107
AL8
B
442 444Right-handed 310
Helix 108
AL9
B
445 451Right-handed alpha
Helix 109
AM1
B
452 466Right-handed alpha
Helix 110
AM2
B
466 492Right-handed alpha
Helix 111
AM3
B
504 531Right-handed alpha
Helix 112
AM4
B
532 534Right-handed 310
Helix 113
AM5
B
548 569Right-handed alpha
Helix 114
AM6
B
573 589Right-handed alpha
Helix 115
AM7
B
590 594Right-handed 310
Helix 116
AM8
B
603 609Right-handed alpha
Helix 117
AM9
B
610 636Right-handed alpha
Helix 118
AN1
B
665 679Right-handed alpha
Helix 119
AN2
B
683 689Right-handed alpha
Helix 120
AN3
B
691 723Right-handed alpha
Helix 121
AN4
B
730 747Right-handed alpha
Helix 122
AN5
B
749 756Right-handed alpha
Helix 123
AN6
B
768 770Right-handed 310
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There are 4 sheets in PDB entry 8JU5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 410first strand
Strand 2
A
414 420anti-parallel
Strand 3
A
775 783anti-parallel
Strand 4
A
760 762anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
405 406first strand
Strand 2
D
418 420anti-parallel
Strand 3
D
774 778anti-parallel
Strand 4
D
760 763anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
405 406first strand
Strand 2
C
417 420anti-parallel
Strand 3
C
772 780anti-parallel
Strand 4
C
760 766anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
405 406first strand
Strand 2
B
418 420anti-parallel
Strand 3
B
772 779anti-parallel
Strand 4
B
760 766anti-parallel
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