Analysis of interatomic Contacts of Structural Units in PDB entry:
8JU6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JU6 entry

There are 4 chains in PDB entry 8JU6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 148SER 786
B
 VAL 148SER 786
D
 VAL 148SER 786
C
 VAL 148SER 786
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are127 helices in PDB entry 8JU6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
150 161Right-handed alpha
Helix 2
AA2
A
162 167Right-handed 310
Helix 3
AA3
A
168 176Right-handed alpha
Helix 4
AA4
A
182 186Right-handed 310
Helix 5
AA5
A
193 201Right-handed alpha
Helix 6
AA6
A
208 220Right-handed alpha
Helix 7
AA7
A
222 228Right-handed alpha
Helix 8
AA8
A
240 248Right-handed alpha
Helix 9
AA9
A
250 259Right-handed alpha
Helix 10
AB1
A
275 279Right-handed 310
Helix 11
AB2
A
287 295Right-handed alpha
Helix 12
AB3
A
297 306Right-handed alpha
Helix 13
AB4
A
323 331Right-handed alpha
Helix 14
AB5
A
335 357Right-handed alpha
Helix 15
AB6
A
361 365Right-handed 310
Helix 16
AB7
A
372 381Right-handed alpha
Helix 17
AB8
A
382 391Right-handed alpha
Helix 18
AB9
A
396 403Right-handed 310
Helix 19
AC1
A
432 440Right-handed alpha
Helix 20
AC2
A
442 450Right-handed alpha
Helix 21
AC3
A
452 466Right-handed alpha
Helix 22
AC4
A
466 492Right-handed alpha
Helix 23
AC5
A
504 535Right-handed alpha
Helix 24
AC6
A
546 570Right-handed alpha
Helix 25
AC7
A
573 589Right-handed alpha
Helix 26
AC8
A
590 595Right-handed 310
Helix 27
AC9
A
596 612Right-handed alpha
Helix 28
AD1
A
613 636Right-handed alpha
Helix 29
AD2
A
664 679Right-handed alpha
Helix 30
AD3
A
683 687Right-handed 310
Helix 31
AD4
A
691 720Right-handed alpha
Helix 32
AD5
A
721 748Right-handed alpha
Helix 33
AD6
A
749 756Right-handed alpha
Helix 34
AD7
B
150 161Right-handed alpha
Helix 35
AD8
B
162 167Right-handed 310
Helix 36
AD9
B
168 177Right-handed alpha
Helix 37
AE1
B
182 186Right-handed 310
Helix 38
AE2
B
193 201Right-handed alpha
Helix 39
AE3
B
208 221Right-handed alpha
Helix 40
AE4
B
222 228Right-handed alpha
Helix 41
AE5
B
240 248Right-handed alpha
Helix 42
AE6
B
250 259Right-handed alpha
Helix 43
AE7
B
275 279Right-handed 310
Helix 44
AE8
B
287 295Right-handed alpha
Helix 45
AE9
B
297 306Right-handed alpha
Helix 46
AF1
B
323 331Right-handed alpha
Helix 47
AF2
B
335 357Right-handed alpha
Helix 48
AF3
B
361 365Right-handed 310
Helix 49
AF4
B
372 381Right-handed alpha
Helix 50
AF5
B
382 391Right-handed alpha
Helix 51
AF6
B
396 403Right-handed 310
Helix 52
AF7
B
432 440Right-handed alpha
Helix 53
AF8
B
442 450Right-handed alpha
Helix 54
AF9
B
452 492Right-handed alpha
Helix 55
AG1
B
504 535Right-handed alpha
Helix 56
AG2
B
546 570Right-handed alpha
Helix 57
AG3
B
574 589Right-handed alpha
Helix 58
AG4
B
590 595Right-handed 310
Helix 59
AG5
B
596 612Right-handed alpha
Helix 60
AG6
B
613 636Right-handed alpha
Helix 61
AG7
B
664 679Right-handed alpha
Helix 62
AG8
B
682 687Right-handed 310
Helix 63
AG9
B
691 748Right-handed alpha
Helix 64
AH1
B
749 756Right-handed alpha
Helix 65
AH2
D
150 161Right-handed alpha
Helix 66
AH3
D
163 167Right-handed 310
Helix 67
AH4
D
168 176Right-handed alpha
Helix 68
AH5
D
182 186Right-handed 310
Helix 69
AH6
D
193 201Right-handed alpha
Helix 70
AH7
D
208 220Right-handed alpha
Helix 71
AH8
D
222 228Right-handed alpha
Helix 72
AH9
D
240 248Right-handed alpha
Helix 73
AI1
D
250 259Right-handed alpha
Helix 74
AI2
D
275 279Right-handed 310
Helix 75
AI3
D
287 295Right-handed alpha
Helix 76
AI4
D
297 306Right-handed alpha
Helix 77
AI5
D
323 332Right-handed alpha
Helix 78
AI6
D
335 357Right-handed alpha
Helix 79
AI7
D
361 365Right-handed 310
Helix 80
AI8
D
372 381Right-handed alpha
Helix 81
AI9
D
382 391Right-handed alpha
Helix 82
AJ1
D
399 403Right-handed 310
Helix 83
AJ2
D
432 440Right-handed alpha
Helix 84
AJ3
D
442 450Right-handed alpha
Helix 85
AJ4
D
452 492Right-handed alpha
Helix 86
AJ5
D
504 535Right-handed alpha
Helix 87
AJ6
D
546 570Right-handed alpha
Helix 88
AJ7
D
574 589Right-handed alpha
Helix 89
AJ8
D
590 595Right-handed 310
Helix 90
AJ9
D
596 612Right-handed alpha
Helix 91
AK1
D
613 636Right-handed alpha
Helix 92
AK2
D
664 679Right-handed alpha
Helix 93
AK3
D
683 687Right-handed 310
Helix 94
AK4
D
691 748Right-handed alpha
Helix 95
AK5
D
749 756Right-handed alpha
Helix 96
AK6
C
150 161Right-handed alpha
Helix 97
AK7
C
162 167Right-handed 310
Helix 98
AK8
C
168 176Right-handed alpha
Helix 99
AK9
C
182 186Right-handed 310
Helix 100
AL1
C
193 201Right-handed alpha
Helix 101
AL2
C
208 220Right-handed alpha
Helix 102
AL3
C
222 228Right-handed alpha
Helix 103
AL4
C
240 248Right-handed alpha
Helix 104
AL5
C
250 259Right-handed alpha
Helix 105
AL6
C
275 279Right-handed 310
Helix 106
AL7
C
287 295Right-handed alpha
Helix 107
AL8
C
297 306Right-handed alpha
Helix 108
AL9
C
323 332Right-handed alpha
Helix 109
AM1
C
335 357Right-handed alpha
Helix 110
AM2
C
361 365Right-handed 310
Helix 111
AM3
C
372 381Right-handed alpha
Helix 112
AM4
C
382 391Right-handed alpha
Helix 113
AM5
C
399 403Right-handed 310
Helix 114
AM6
C
432 440Right-handed alpha
Helix 115
AM7
C
442 450Right-handed alpha
Helix 116
AM8
C
452 466Right-handed alpha
Helix 117
AM9
C
466 492Right-handed alpha
Helix 118
AN1
C
504 535Right-handed alpha
Helix 119
AN2
C
546 570Right-handed alpha
Helix 120
AN3
C
573 589Right-handed alpha
Helix 121
AN4
C
590 595Right-handed 310
Helix 122
AN5
C
596 612Right-handed alpha
Helix 123
AN6
C
613 636Right-handed alpha
Helix 124
AN7
C
664 679Right-handed alpha
Helix 125
AN8
C
683 687Right-handed 310
Helix 126
AN9
C
691 748Right-handed alpha
Helix 127
AO1
C
749 756Right-handed alpha
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There are 4 sheets in PDB entry 8JU6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 410first strand
Strand 2
A
415 420anti-parallel
Strand 3
A
777 782anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
405 410first strand
Strand 2
B
415 420anti-parallel
Strand 3
B
777 782anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
405 410first strand
Strand 2
D
415 420anti-parallel
Strand 3
D
777 782anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
405 410first strand
Strand 2
C
415 420anti-parallel
Strand 3
C
777 782anti-parallel
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