Analysis of interatomic Contacts of Structural Units in PDB entry:
8JU9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JU9 entry

There is 1 chain in PDB entry 8JU9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 8JU9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 10Right-handed alpha
Helix 2
AA2
A
15 28Right-handed alpha
Helix 3
AA3
A
28 34Right-handed alpha
Helix 4
AA4
A
36 45Right-handed alpha
Helix 5
AA5
A
47 58Right-handed alpha
Helix 6
AA6
A
62 74Right-handed alpha
Helix 7
AA7
A
75 81Right-handed alpha
Helix 8
AA8
A
90 113Right-handed alpha
Helix 9
AA9
A
114 127Right-handed alpha
Helix 10
AB1
A
137 151Right-handed alpha
Helix 11
AB2
A
162 172Right-handed alpha
Helix 12
AB3
A
188 201Right-handed alpha
Helix 13
AB4
A
213 218Right-handed alpha
Helix 14
AB5
A
237 258Right-handed alpha
Helix 15
AB6
A
261 272Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 8JU9.

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 160first strand
Strand 2
A
130 134parallel
Strand 3
A
178 182parallel
Strand 4
A
204 208parallel
Strand 5
A
221 222parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il