Analysis of interatomic Contacts of Structural Units in PDB entry:
8JUE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JUE entry

There are 4 chains in PDB entry 8JUE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 138	ARG 544
B	LEU 139	ARG 544
C	GLU 140	ARG 544
D	SER 138	ARG 544

There are 84 helices in PDB entry 8JUE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	138	149	Right-handed alpha
Helix 2	AA2	A	156	165	Right-handed alpha
Helix 3	AA3	A	172	174	Right-handed 310
Helix 4	AA4	A	175	186	Right-handed alpha
Helix 5	AA5	A	196	205	Right-handed alpha
Helix 6	AA6	A	207	216	Right-handed alpha
Helix 7	AA7	A	223	240	Right-handed alpha
Helix 8	AA8	A	285	287	Right-handed 310
Helix 9	AA9	A	288	301	Right-handed alpha
Helix 10	AB1	A	301	306	Right-handed alpha
Helix 11	AB2	A	315	319	Right-handed 310
Helix 12	AB3	A	334	345	Right-handed alpha
Helix 13	AB4	A	350	366	Right-handed alpha
Helix 14	AB5	A	374	385	Right-handed alpha
Helix 15	AB6	A	385	398	Right-handed alpha
Helix 16	AB7	A	406	419	Right-handed alpha
Helix 17	AB8	A	423	436	Right-handed alpha
Helix 18	AB9	A	449	464	Right-handed alpha
Helix 19	AC1	A	465	467	Right-handed 310
Helix 20	AC2	A	468	476	Right-handed alpha
Helix 21	AC3	A	511	525	Right-handed alpha
Helix 22	AC4	B	140	149	Right-handed alpha
Helix 23	AC5	B	156	165	Right-handed alpha
Helix 24	AC6	B	172	174	Right-handed 310
Helix 25	AC7	B	175	186	Right-handed alpha
Helix 26	AC8	B	196	205	Right-handed alpha
Helix 27	AC9	B	207	216	Right-handed alpha
Helix 28	AD1	B	223	240	Right-handed alpha
Helix 29	AD2	B	250	255	Right-handed alpha
Helix 30	AD3	B	285	287	Right-handed 310
Helix 31	AD4	B	288	301	Right-handed alpha
Helix 32	AD5	B	301	309	Right-handed alpha
Helix 33	AD6	B	315	319	Right-handed 310
Helix 34	AD7	B	334	345	Right-handed alpha
Helix 35	AD8	B	350	366	Right-handed alpha
Helix 36	AD9	B	374	383	Right-handed alpha
Helix 37	AE1	B	385	398	Right-handed alpha
Helix 38	AE2	B	406	419	Right-handed alpha
Helix 39	AE3	B	423	436	Right-handed alpha
Helix 40	AE4	B	449	464	Right-handed alpha
Helix 41	AE5	B	465	467	Right-handed 310
Helix 42	AE6	B	468	476	Right-handed alpha
Helix 43	AE7	B	511	525	Right-handed alpha
Helix 44	AE8	C	141	148	Right-handed alpha
Helix 45	AE9	C	156	166	Right-handed alpha
Helix 46	AF1	C	172	174	Right-handed 310
Helix 47	AF2	C	175	188	Right-handed alpha
Helix 48	AF3	C	196	205	Right-handed alpha
Helix 49	AF4	C	207	216	Right-handed alpha
Helix 50	AF5	C	223	240	Right-handed alpha
Helix 51	AF6	C	285	287	Right-handed 310
Helix 52	AF7	C	288	301	Right-handed alpha
Helix 53	AF8	C	301	306	Right-handed alpha
Helix 54	AF9	C	334	343	Right-handed alpha
Helix 55	AG1	C	350	366	Right-handed alpha
Helix 56	AG2	C	374	383	Right-handed alpha
Helix 57	AG3	C	385	399	Right-handed alpha
Helix 58	AG4	C	406	419	Right-handed alpha
Helix 59	AG5	C	423	436	Right-handed alpha
Helix 60	AG6	C	449	464	Right-handed alpha
Helix 61	AG7	C	465	467	Right-handed 310
Helix 62	AG8	C	468	476	Right-handed alpha
Helix 63	AG9	C	511	525	Right-handed alpha
Helix 64	AH1	D	139	148	Right-handed alpha
Helix 65	AH2	D	155	165	Right-handed alpha
Helix 66	AH3	D	172	174	Right-handed 310
Helix 67	AH4	D	175	185	Right-handed alpha
Helix 68	AH5	D	196	205	Right-handed alpha
Helix 69	AH6	D	207	216	Right-handed alpha
Helix 70	AH7	D	223	240	Right-handed alpha
Helix 71	AH8	D	285	287	Right-handed 310
Helix 72	AH9	D	288	301	Right-handed alpha
Helix 73	AI1	D	301	306	Right-handed alpha
Helix 74	AI2	D	315	319	Right-handed 310
Helix 75	AI3	D	334	343	Right-handed alpha
Helix 76	AI4	D	350	366	Right-handed alpha
Helix 77	AI5	D	374	384	Right-handed alpha
Helix 78	AI6	D	385	399	Right-handed alpha
Helix 79	AI7	D	406	419	Right-handed alpha
Helix 80	AI8	D	423	436	Right-handed alpha
Helix 81	AI9	D	449	464	Right-handed alpha
Helix 82	AJ1	D	465	467	Right-handed 310
Helix 83	AJ2	D	468	476	Right-handed alpha
Helix 84	AJ3	D	511	525	Right-handed alpha

There are 12 sheets in PDB entry 8JUE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	194	195	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	246	first strand
Strand 2	A	504	505	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	276	first strand
Strand 2	A	262	267	anti-parallel
Strand 3	A	496	501	anti-parallel
Strand 4	A	487	492	anti-parallel
Strand 5	A	480	482	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	283	first strand
Strand 2	A	420	422	anti-parallel
Strand 3	A	371	373	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	155	first strand
Strand 2	B	194	195	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	276	first strand
Strand 2	B	262	267	anti-parallel
Strand 3	B	496	501	anti-parallel
Strand 4	B	487	492	anti-parallel
Strand 5	B	480	482	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	283	first strand
Strand 2	B	420	422	anti-parallel
Strand 3	B	371	373	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	155	first strand
Strand 2	C	194	195	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	276	first strand
Strand 2	C	262	267	anti-parallel
Strand 3	C	496	501	anti-parallel
Strand 4	C	487	492	anti-parallel
Strand 5	C	480	482	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	283	first strand
Strand 2	C	420	422	anti-parallel
Strand 3	C	371	373	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	272	276	first strand
Strand 2	D	262	267	anti-parallel
Strand 3	D	496	501	anti-parallel
Strand 4	D	487	492	anti-parallel
Strand 5	D	480	482	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	282	283	first strand
Strand 2	D	420	422	anti-parallel
Strand 3	D	371	373	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JUE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JUE