Analysis of interatomic Contacts of Structural Units in PDB entry:
8JUI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JUI entry

There are 2 chains in PDB entry 8JUI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 3THR 196
A
 PHE 198GLU 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 8JUI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed alpha
Helix 2
AA2
A
51 66Right-handed alpha
Helix 3
AA3
A
75 85Right-handed alpha
Helix 4
AA4
A
100 110Right-handed alpha
Helix 5
AA5
A
111 115Right-handed 310
Helix 6
AA6
A
125 132Right-handed alpha
Helix 7
AA7
A
154 165Right-handed alpha
Helix 8
AA8
A
176 181Right-handed alpha
Helix 9
AA9
A
182 187Right-handed 310
Helix 10
AB1
A
214 229Right-handed alpha
Helix 11
AB2
A
233 245Right-handed alpha
Helix 12
AB3
A
246 266Right-handed alpha
Helix 13
AB4
A
284 292Right-handed alpha
Helix 14
AB5
A
305 316Right-handed alpha
Helix 15
AB6
A
334 338Right-handed 310
Helix 16
AB7
A
344 351Right-handed alpha
Helix 17
AB8
A
366 380Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8JUI. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 73first strand
Strand 2
A
208 212anti-parallel
Strand 3
A
190 194anti-parallel
Strand 4
A
168 172parallel
Strand 5
A
137 143parallel
Strand 6
A
92 96parallel
Strand 7
A
117 121parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 275first strand
Strand 2
A
298 302anti-parallel
Strand 3
A
357 361anti-parallel
Strand 4
A
331 333anti-parallel
Strand 5
A
320 321parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il