Analysis of interatomic Contacts of Structural Units in PDB entry:
8JUL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JUL entry

There are 2 chains in PDB entry 8JUL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 43	ARG 820
B	ALA 43	ARG 820

There are 32 helices in PDB entry 8JUL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	302	331	Right-handed alpha
Helix 2	AA2	A	443	473	Right-handed alpha
Helix 3	AA3	A	495	500	Right-handed alpha
Helix 4	AA4	A	501	528	Right-handed alpha
Helix 5	AA5	A	541	563	Right-handed alpha
Helix 6	AA6	A	573	591	Right-handed alpha
Helix 7	AA7	A	607	618	Right-handed alpha
Helix 8	AA8	A	619	621	Right-handed 310
Helix 9	AA9	A	627	652	Right-handed alpha
Helix 10	AB1	A	654	659	Right-handed alpha
Helix 11	AB2	A	682	697	Right-handed alpha
Helix 12	AB3	A	708	735	Right-handed alpha
Helix 13	AB4	A	740	762	Right-handed alpha
Helix 14	AB5	A	771	776	Right-handed alpha
Helix 15	AB6	A	791	811	Right-handed alpha
Helix 16	AB7	A	813	817	Right-handed 310
Helix 17	AB8	B	302	331	Right-handed alpha
Helix 18	AB9	B	443	473	Right-handed alpha
Helix 19	AC1	B	495	500	Right-handed alpha
Helix 20	AC2	B	501	528	Right-handed alpha
Helix 21	AC3	B	541	563	Right-handed alpha
Helix 22	AC4	B	573	591	Right-handed alpha
Helix 23	AC5	B	607	618	Right-handed alpha
Helix 24	AC6	B	619	621	Right-handed 310
Helix 25	AC7	B	627	652	Right-handed alpha
Helix 26	AC8	B	654	659	Right-handed alpha
Helix 27	AC9	B	682	696	Right-handed alpha
Helix 28	AD1	B	708	735	Right-handed alpha
Helix 29	AD2	B	740	762	Right-handed alpha
Helix 30	AD3	B	771	776	Right-handed alpha
Helix 31	AD4	B	791	811	Right-handed alpha
Helix 32	AD5	B	813	817	Right-handed 310

There are 10 sheets in PDB entry 8JUL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	46	first strand
Strand 2	A	62	70	parallel
Strand 3	A	141	150	anti-parallel
Strand 4	A	93	98	anti-parallel
Strand 5	A	103	108	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	55	first strand
Strand 2	A	158	165	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	124	128	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	114	first strand
Strand 2	A	118	122	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	181	first strand
Strand 2	A	291	299	anti-parallel
Strand 3	A	199	205	anti-parallel
Strand 4	A	243	249	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	192	first strand
Strand 2	A	257	264	anti-parallel
Strand 3	A	213	219	anti-parallel
Strand 4	A	236	240	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	46	first strand
Strand 2	B	62	70	parallel
Strand 3	B	141	150	anti-parallel
Strand 4	B	93	98	anti-parallel
Strand 5	B	103	108	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	55	first strand
Strand 2	B	158	165	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	124	128	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	114	first strand
Strand 2	B	118	122	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	181	first strand
Strand 2	B	291	299	anti-parallel
Strand 3	B	199	205	anti-parallel
Strand 4	B	243	249	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	257	264	anti-parallel
Strand 3	B	213	219	anti-parallel
Strand 4	B	236	240	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JUL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JUL