Analysis of interatomic Contacts of Structural Units in PDB entry:
8JUN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JUN entry

There are 2 chains in PDB entry 8JUN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 42	GLN 823
B	ALA 42	GLN 823

There are 38 helices in PDB entry 8JUN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	251	253	Right-handed 310
Helix 2	AA2	A	268	272	Right-handed 310
Helix 3	AA3	A	302	332	Right-handed alpha
Helix 4	AA4	A	441	470	Right-handed alpha
Helix 5	AA5	A	494	500	Right-handed alpha
Helix 6	AA6	A	501	528	Right-handed alpha
Helix 7	AA7	A	530	535	Right-handed alpha
Helix 8	AA8	A	542	565	Right-handed alpha
Helix 9	AA9	A	570	575	Right-handed 310
Helix 10	AB1	A	576	592	Right-handed alpha
Helix 11	AB2	A	602	621	Right-handed alpha
Helix 12	AB3	A	625	647	Right-handed alpha
Helix 13	AB4	A	658	668	Right-handed alpha
Helix 14	AB5	A	680	705	Right-handed alpha
Helix 15	AB6	A	708	735	Right-handed alpha
Helix 16	AB7	A	740	762	Right-handed alpha
Helix 17	AB8	A	771	777	Right-handed alpha
Helix 18	AB9	A	789	812	Right-handed alpha
Helix 19	AC1	A	813	816	Right-handed 310
Helix 20	AC2	B	251	253	Right-handed 310
Helix 21	AC3	B	268	272	Right-handed 310
Helix 22	AC4	B	302	332	Right-handed alpha
Helix 23	AC5	B	441	470	Right-handed alpha
Helix 24	AC6	B	494	500	Right-handed alpha
Helix 25	AC7	B	501	528	Right-handed alpha
Helix 26	AC8	B	530	535	Right-handed alpha
Helix 27	AC9	B	542	565	Right-handed alpha
Helix 28	AD1	B	570	575	Right-handed 310
Helix 29	AD2	B	576	592	Right-handed alpha
Helix 30	AD3	B	602	621	Right-handed alpha
Helix 31	AD4	B	625	647	Right-handed alpha
Helix 32	AD5	B	658	668	Right-handed alpha
Helix 33	AD6	B	680	705	Right-handed alpha
Helix 34	AD7	B	708	735	Right-handed alpha
Helix 35	AD8	B	740	762	Right-handed alpha
Helix 36	AD9	B	771	777	Right-handed alpha
Helix 37	AE1	B	789	812	Right-handed alpha
Helix 38	AE2	B	813	816	Right-handed 310

There are 10 sheets in PDB entry 8JUN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	56	first strand
Strand 2	A	157	165	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	124	129	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	70	first strand
Strand 2	A	141	150	anti-parallel
Strand 3	A	93	98	anti-parallel
Strand 4	A	103	108	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	113	first strand
Strand 2	A	119	122	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	181	first strand
Strand 2	A	291	299	anti-parallel
Strand 3	A	199	205	anti-parallel
Strand 4	A	243	249	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	192	first strand
Strand 2	A	257	264	anti-parallel
Strand 3	A	213	218	anti-parallel
Strand 4	A	236	240	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	56	first strand
Strand 2	B	157	165	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	124	129	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	70	first strand
Strand 2	B	141	150	anti-parallel
Strand 3	B	93	98	anti-parallel
Strand 4	B	103	108	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	113	first strand
Strand 2	B	119	122	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	181	first strand
Strand 2	B	291	299	anti-parallel
Strand 3	B	199	205	anti-parallel
Strand 4	B	243	249	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	257	264	anti-parallel
Strand 3	B	213	218	anti-parallel
Strand 4	B	236	240	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JUN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JUN