Analysis of interatomic Contacts of Structural Units in PDB entry:
8JUS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JUS entry

There are 2 chains in PDB entry 8JUS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 335
B
 MET 1PHE 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8JUS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 23Right-handed alpha
Helix 2
AA2
A
72 85Right-handed alpha
Helix 3
AA3
A
107 112Right-handed alpha
Helix 4
AA4
A
113 117Right-handed 310
Helix 5
AA5
A
127 142Right-handed alpha
Helix 6
AA6
A
156 159Right-handed 310
Helix 7
AA7
A
160 177Right-handed alpha
Helix 8
AA8
A
207 222Right-handed alpha
Helix 9
AA9
A
253 263Right-handed alpha
Helix 10
AB1
A
272 276Right-handed 310
Helix 11
AB2
A
280 285Right-handed alpha
Helix 12
AB3
A
318 332Right-handed alpha
Helix 13
AB4
B
10 23Right-handed alpha
Helix 14
AB5
B
72 84Right-handed alpha
Helix 15
AB6
B
107 112Right-handed alpha
Helix 16
AB7
B
113 117Right-handed 310
Helix 17
AB8
B
127 142Right-handed alpha
Helix 18
AB9
B
156 159Right-handed 310
Helix 19
AC1
B
160 177Right-handed alpha
Helix 20
AC2
B
207 222Right-handed alpha
Helix 21
AC3
B
253 264Right-handed alpha
Helix 22
AC4
B
272 276Right-handed 310
Helix 23
AC5
B
280 285Right-handed alpha
Helix 24
AC6
B
318 332Right-handed alpha
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There are 6 sheets in PDB entry 8JUS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
29 34parallel
Strand 3
A
2 6parallel
Strand 4
A
66 69parallel
Strand 5
A
89 92parallel
Strand 6
A
122 124parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
48 51anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 233first strand
Strand 2
A
146 155parallel
Strand 3
A
239 248anti-parallel
Strand 4
A
304 312anti-parallel
Strand 5
A
290 297anti-parallel
Strand 6
A
267 269parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
29 34parallel
Strand 3
B
2 6parallel
Strand 4
B
66 69parallel
Strand 5
B
89 92parallel
Strand 6
B
122 124parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 45first strand
Strand 2
B
48 51anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 233first strand
Strand 2
B
146 155parallel
Strand 3
B
239 248anti-parallel
Strand 4
B
304 312anti-parallel
Strand 5
B
290 297anti-parallel
Strand 6
B
267 269parallel
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