Analysis of interatomic Contacts of Structural Units in PDB entry:
8JUV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JUV entry

There is 1 chain in PDB entry 8JUV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3LYS 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8JUV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 15Right-handed alpha
Helix 2
AA2
A
19 21Right-handed 310
Helix 3
AA3
A
57 75Right-handed alpha
Helix 4
AA4
A
105 111Right-handed alpha
Helix 5
AA5
A
125 146Right-handed alpha
Helix 6
AA6
A
157 159Right-handed 310
Helix 7
AA7
A
202 208Right-handed 310
Helix 8
AA8
A
209 216Right-handed alpha
Helix 9
AA9
A
219 237Right-handed alpha
Helix 10
AB1
A
252 263Right-handed alpha
Helix 11
AB2
A
263 272Right-handed alpha
Helix 12
AB3
A
280 298Right-handed alpha
Helix 13
AB4
A
301 305Right-handed 310
Helix 14
AB5
A
307 320Right-handed alpha
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There are 4 sheets in PDB entry 8JUV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
83 89parallel
Strand 3
A
93 99anti-parallel
Strand 4
A
46 52anti-parallel
Strand 5
A
30 36anti-parallel
Strand 6
A
23 26anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
178 179anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 163first strand
Strand 2
A
169 171anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 244first strand
Strand 2
A
250 251anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il