Analysis of interatomic Contacts of Structural Units in PDB entry:
8JUW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JUW entry

There are 6 chains in PDB entry 8JUW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 413	CYS 1388
B	SER 422	SER 1389
C	SER 421	ARG 1390
D	LEU 419	SER 1389
E	SER 422	ARG 1390
F	SER 422	SER 1389

There are154 helices in PDB entry 8JUW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	432	448	Right-handed alpha
Helix 2	AA2	A	474	485	Right-handed alpha
Helix 3	AA3	A	507	524	Right-handed alpha
Helix 4	AA4	A	533	536	Right-handed 310
Helix 5	AA5	A	548	561	Right-handed alpha
Helix 6	AA6	A	576	580	Right-handed 310
Helix 7	AA7	A	600	612	Right-handed alpha
Helix 8	AA8	A	620	631	Right-handed alpha
Helix 9	AA9	A	636	655	Right-handed alpha
Helix 10	AB1	A	677	685	Right-handed alpha
Helix 11	AB2	A	705	721	Right-handed alpha
Helix 12	AB3	A	724	729	Right-handed 310
Helix 13	AB4	A	808	817	Right-handed alpha
Helix 14	AB5	A	826	831	Right-handed alpha
Helix 15	AB6	A	837	852	Right-handed alpha
Helix 16	AB7	A	861	866	Right-handed alpha
Helix 17	AB8	A	870	881	Right-handed alpha
Helix 18	AB9	A	899	903	Right-handed 310
Helix 19	AC1	A	904	909	Right-handed alpha
Helix 20	AC2	A	910	911	Right-handed 310
Helix 21	AC3	A	912	916	Right-handed 310
Helix 22	AC4	A	926	938	Right-handed alpha
Helix 23	AC5	A	939	943	Right-handed 310
Helix 24	AC6	A	1331	1344	Right-handed alpha
Helix 25	AC7	A	1348	1365	Right-handed alpha
Helix 26	AC8	A	1375	1386	Right-handed alpha
Helix 27	AC9	B	432	443	Right-handed alpha
Helix 28	AD1	B	444	447	Right-handed 310
Helix 29	AD2	B	450	456	Right-handed alpha
Helix 30	AD3	B	472	485	Right-handed alpha
Helix 31	AD4	B	508	523	Right-handed alpha
Helix 32	AD5	B	532	536	Right-handed 310
Helix 33	AD6	B	545	560	Right-handed alpha
Helix 34	AD7	B	576	580	Right-handed 310
Helix 35	AD8	B	600	612	Right-handed alpha
Helix 36	AD9	B	620	630	Right-handed alpha
Helix 37	AE1	B	636	646	Right-handed alpha
Helix 38	AE2	B	648	655	Right-handed alpha
Helix 39	AE3	B	656	659	Right-handed 310
Helix 40	AE4	B	675	686	Right-handed alpha
Helix 41	AE5	B	705	724	Right-handed alpha
Helix 42	AE6	B	725	728	Right-handed 310
Helix 43	AE7	B	808	817	Right-handed alpha
Helix 44	AE8	B	826	831	Right-handed alpha
Helix 45	AE9	B	837	852	Right-handed alpha
Helix 46	AF1	B	861	866	Right-handed alpha
Helix 47	AF2	B	867	869	Right-handed 310
Helix 48	AF3	B	870	882	Right-handed alpha
Helix 49	AF4	B	899	903	Right-handed 310
Helix 50	AF5	B	904	909	Right-handed alpha
Helix 51	AF6	B	910	911	Right-handed 310
Helix 52	AF7	B	912	916	Right-handed 310
Helix 53	AF8	B	925	935	Right-handed alpha
Helix 54	AF9	B	1331	1344	Right-handed alpha
Helix 55	AG1	B	1348	1365	Right-handed alpha
Helix 56	AG2	B	1375	1386	Right-handed alpha
Helix 57	AG3	C	432	443	Right-handed alpha
Helix 58	AG4	C	443	448	Right-handed alpha
Helix 59	AG5	C	451	456	Right-handed alpha
Helix 60	AG6	C	473	486	Right-handed alpha
Helix 61	AG7	C	510	523	Right-handed alpha
Helix 62	AG8	C	533	536	Right-handed 310
Helix 63	AG9	C	546	559	Right-handed alpha
Helix 64	AH1	C	576	580	Right-handed 310
Helix 65	AH2	C	581	585	Right-handed 310
Helix 66	AH3	C	600	612	Right-handed alpha
Helix 67	AH4	C	620	631	Right-handed alpha
Helix 68	AH5	C	636	655	Right-handed alpha
Helix 69	AH6	C	675	685	Right-handed alpha
Helix 70	AH7	C	705	724	Right-handed alpha
Helix 71	AH8	C	809	817	Right-handed alpha
Helix 72	AH9	C	826	831	Right-handed alpha
Helix 73	AI1	C	837	852	Right-handed alpha
Helix 74	AI2	C	861	866	Right-handed alpha
Helix 75	AI3	C	870	881	Right-handed alpha
Helix 76	AI4	C	899	903	Right-handed 310
Helix 77	AI5	C	912	916	Right-handed 310
Helix 78	AI6	C	925	939	Right-handed alpha
Helix 79	AI7	C	1331	1344	Right-handed alpha
Helix 80	AI8	C	1348	1366	Right-handed alpha
Helix 81	AI9	C	1375	1385	Right-handed alpha
Helix 82	AJ1	D	432	443	Right-handed alpha
Helix 83	AJ2	D	443	448	Right-handed alpha
Helix 84	AJ3	D	451	456	Right-handed alpha
Helix 85	AJ4	D	472	486	Right-handed alpha
Helix 86	AJ5	D	507	523	Right-handed alpha
Helix 87	AJ6	D	533	536	Right-handed 310
Helix 88	AJ7	D	546	560	Right-handed alpha
Helix 89	AJ8	D	600	612	Right-handed alpha
Helix 90	AJ9	D	620	631	Right-handed alpha
Helix 91	AK1	D	636	655	Right-handed alpha
Helix 92	AK2	D	656	659	Right-handed 310
Helix 93	AK3	D	677	685	Right-handed alpha
Helix 94	AK4	D	689	693	Right-handed 310
Helix 95	AK5	D	705	724	Right-handed alpha
Helix 96	AK6	D	809	817	Right-handed alpha
Helix 97	AK7	D	826	831	Right-handed alpha
Helix 98	AK8	D	837	852	Right-handed alpha
Helix 99	AK9	D	861	866	Right-handed alpha
Helix 100	AL1	D	870	881	Right-handed alpha
Helix 101	AL2	D	904	910	Right-handed alpha
Helix 102	AL3	D	912	916	Right-handed 310
Helix 103	AL4	D	925	938	Right-handed alpha
Helix 104	AL5	D	1331	1344	Right-handed alpha
Helix 105	AL6	D	1348	1366	Right-handed alpha
Helix 106	AL7	D	1375	1386	Right-handed alpha
Helix 107	AL8	E	435	443	Right-handed alpha
Helix 108	AL9	E	443	448	Right-handed alpha
Helix 109	AM1	E	450	455	Right-handed alpha
Helix 110	AM2	E	474	486	Right-handed alpha
Helix 111	AM3	E	507	523	Right-handed alpha
Helix 112	AM4	E	533	536	Right-handed 310
Helix 113	AM5	E	545	561	Right-handed alpha
Helix 114	AM6	E	600	612	Right-handed alpha
Helix 115	AM7	E	620	631	Right-handed alpha
Helix 116	AM8	E	635	655	Right-handed alpha
Helix 117	AM9	E	675	686	Right-handed alpha
Helix 118	AN1	E	705	724	Right-handed alpha
Helix 119	AN2	E	808	817	Right-handed alpha
Helix 120	AN3	E	826	831	Right-handed alpha
Helix 121	AN4	E	837	852	Right-handed alpha
Helix 122	AN5	E	861	866	Right-handed alpha
Helix 123	AN6	E	870	881	Right-handed alpha
Helix 124	AN7	E	904	909	Right-handed alpha
Helix 125	AN8	E	910	911	Right-handed 310
Helix 126	AN9	E	912	916	Right-handed 310
Helix 127	AO1	E	925	933	Right-handed alpha
Helix 128	AO2	E	1331	1344	Right-handed alpha
Helix 129	AO3	E	1348	1366	Right-handed alpha
Helix 130	AO4	E	1375	1386	Right-handed alpha
Helix 131	AO5	F	431	442	Right-handed alpha
Helix 132	AO6	F	442	448	Right-handed alpha
Helix 133	AO7	F	472	486	Right-handed alpha
Helix 134	AO8	F	510	523	Right-handed alpha
Helix 135	AO9	F	532	537	Right-handed alpha
Helix 136	AP1	F	545	562	Right-handed alpha
Helix 137	AP2	F	602	612	Right-handed alpha
Helix 138	AP3	F	620	631	Right-handed alpha
Helix 139	AP4	F	636	654	Right-handed alpha
Helix 140	AP5	F	655	659	Right-handed 310
Helix 141	AP6	F	675	684	Right-handed alpha
Helix 142	AP7	F	705	724	Right-handed alpha
Helix 143	AP8	F	808	817	Right-handed alpha
Helix 144	AP9	F	826	831	Right-handed alpha
Helix 145	AQ1	F	837	852	Right-handed alpha
Helix 146	AQ2	F	861	866	Right-handed alpha
Helix 147	AQ3	F	870	883	Right-handed alpha
Helix 148	AQ4	F	899	903	Right-handed 310
Helix 149	AQ5	F	904	909	Right-handed alpha
Helix 150	AQ6	F	925	932	Right-handed alpha
Helix 151	AQ7	F	1332	1344	Right-handed alpha
Helix 152	AQ8	F	1345	1347	Right-handed 310
Helix 153	AQ9	F	1348	1366	Right-handed alpha
Helix 154	AR1	F	1374	1386	Right-handed alpha

There are 12 sheets in PDB entry 8JUW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	492	497	first strand
Strand 2	A	526	531	parallel
Strand 3	A	568	574	parallel
Strand 4	A	462	466	parallel
Strand 5	A	592	595	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	821	824	first strand
Strand 2	A	855	859	parallel
Strand 3	A	890	896	parallel
Strand 4	A	794	798	parallel
Strand 5	A	918	920	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	494	496	first strand
Strand 2	B	526	530	parallel
Strand 3	B	568	574	parallel
Strand 4	B	462	466	parallel
Strand 5	B	593	595	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	822	824	first strand
Strand 2	B	855	859	parallel
Strand 3	B	890	896	parallel
Strand 4	B	794	798	parallel
Strand 5	B	918	920	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	494	496	first strand
Strand 2	C	526	531	parallel
Strand 3	C	568	574	parallel
Strand 4	C	462	466	parallel
Strand 5	C	592	595	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	821	824	first strand
Strand 2	C	855	859	parallel
Strand 3	C	890	895	parallel
Strand 4	C	795	798	parallel
Strand 5	C	919	920	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	492	496	first strand
Strand 2	D	526	531	parallel
Strand 3	D	568	573	parallel
Strand 4	D	462	466	parallel
Strand 5	D	593	595	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	821	824	first strand
Strand 2	D	855	858	parallel
Strand 3	D	890	895	parallel
Strand 4	D	794	798	parallel
Strand 5	D	918	920	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	492	495	first strand
Strand 2	E	526	531	parallel
Strand 3	E	568	573	parallel
Strand 4	E	462	466	parallel
Strand 5	E	592	595	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	822	824	first strand
Strand 2	E	855	859	parallel
Strand 3	E	890	896	parallel
Strand 4	E	794	798	parallel
Strand 5	E	918	920	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	492	497	first strand
Strand 2	F	526	531	parallel
Strand 3	F	568	573	parallel
Strand 4	F	462	466	parallel
Strand 5	F	594	595	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	821	824	first strand
Strand 2	F	855	859	parallel
Strand 3	F	891	896	parallel
Strand 4	F	794	798	parallel
Strand 5	F	918	920	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JUW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JUW