Analysis of interatomic Contacts of Structural Units in PDB entry:
8JUY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JUY entry

There are 6 chains in PDB entry 8JUY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 413	LEU 923
B	SER 422	SER 1389
C	SER 421	ARG 1390
D	LEU 419	SER 1389
E	SER 422	ARG 1390
F	SER 422	SER 1389

There are151 helices in PDB entry 8JUY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	432	448	Right-handed alpha
Helix 2	AA2	A	474	484	Right-handed alpha
Helix 3	AA3	A	507	524	Right-handed alpha
Helix 4	AA4	A	548	561	Right-handed alpha
Helix 5	AA5	A	600	611	Right-handed alpha
Helix 6	AA6	A	620	631	Right-handed alpha
Helix 7	AA7	A	636	655	Right-handed alpha
Helix 8	AA8	A	678	684	Right-handed alpha
Helix 9	AA9	A	705	720	Right-handed alpha
Helix 10	AB1	A	808	817	Right-handed alpha
Helix 11	AB2	A	826	831	Right-handed alpha
Helix 12	AB3	A	837	852	Right-handed alpha
Helix 13	AB4	A	864	868	Right-handed 310
Helix 14	AB5	A	870	880	Right-handed alpha
Helix 15	AB6	A	899	903	Right-handed 310
Helix 16	AB7	A	904	909	Right-handed alpha
Helix 17	AB8	A	910	911	Right-handed 310
Helix 18	AB9	A	912	916	Right-handed 310
Helix 19	AC1	B	432	448	Right-handed alpha
Helix 20	AC2	B	450	456	Right-handed alpha
Helix 21	AC3	B	472	485	Right-handed alpha
Helix 22	AC4	B	505	510	Right-handed alpha
Helix 23	AC5	B	510	523	Right-handed alpha
Helix 24	AC6	B	532	536	Right-handed 310
Helix 25	AC7	B	545	560	Right-handed alpha
Helix 26	AC8	B	576	580	Right-handed 310
Helix 27	AC9	B	600	612	Right-handed alpha
Helix 28	AD1	B	620	629	Right-handed alpha
Helix 29	AD2	B	637	646	Right-handed alpha
Helix 30	AD3	B	648	655	Right-handed alpha
Helix 31	AD4	B	675	686	Right-handed alpha
Helix 32	AD5	B	689	694	Right-handed alpha
Helix 33	AD6	B	705	724	Right-handed alpha
Helix 34	AD7	B	725	728	Right-handed 310
Helix 35	AD8	B	808	817	Right-handed alpha
Helix 36	AD9	B	826	831	Right-handed alpha
Helix 37	AE1	B	837	852	Right-handed alpha
Helix 38	AE2	B	861	866	Right-handed alpha
Helix 39	AE3	B	867	869	Right-handed 310
Helix 40	AE4	B	870	881	Right-handed alpha
Helix 41	AE5	B	899	903	Right-handed 310
Helix 42	AE6	B	904	909	Right-handed alpha
Helix 43	AE7	B	912	916	Right-handed 310
Helix 44	AE8	B	925	935	Right-handed alpha
Helix 45	AE9	B	1331	1344	Right-handed alpha
Helix 46	AF1	B	1348	1365	Right-handed alpha
Helix 47	AF2	B	1375	1385	Right-handed alpha
Helix 48	AF3	C	432	443	Right-handed alpha
Helix 49	AF4	C	443	448	Right-handed alpha
Helix 50	AF5	C	448	453	Right-handed alpha
Helix 51	AF6	C	473	486	Right-handed alpha
Helix 52	AF7	C	505	509	Right-handed 310
Helix 53	AF8	C	510	523	Right-handed alpha
Helix 54	AF9	C	532	536	Right-handed 310
Helix 55	AG1	C	545	560	Right-handed alpha
Helix 56	AG2	C	576	580	Right-handed 310
Helix 57	AG3	C	600	612	Right-handed alpha
Helix 58	AG4	C	620	630	Right-handed alpha
Helix 59	AG5	C	636	655	Right-handed alpha
Helix 60	AG6	C	656	661	Right-handed 310
Helix 61	AG7	C	675	686	Right-handed alpha
Helix 62	AG8	C	705	708	Right-handed 310
Helix 63	AG9	C	709	724	Right-handed alpha
Helix 64	AH1	C	809	817	Right-handed alpha
Helix 65	AH2	C	826	831	Right-handed alpha
Helix 66	AH3	C	837	852	Right-handed alpha
Helix 67	AH4	C	861	866	Right-handed alpha
Helix 68	AH5	C	870	881	Right-handed alpha
Helix 69	AH6	C	907	911	Right-handed 310
Helix 70	AH7	C	912	916	Right-handed 310
Helix 71	AH8	C	925	939	Right-handed alpha
Helix 72	AH9	C	1331	1344	Right-handed alpha
Helix 73	AI1	C	1348	1366	Right-handed alpha
Helix 74	AI2	C	1374	1386	Right-handed alpha
Helix 75	AI3	D	432	440	Right-handed alpha
Helix 76	AI4	D	443	448	Right-handed alpha
Helix 77	AI5	D	472	486	Right-handed alpha
Helix 78	AI6	D	507	523	Right-handed alpha
Helix 79	AI7	D	533	536	Right-handed 310
Helix 80	AI8	D	545	560	Right-handed alpha
Helix 81	AI9	D	581	585	Right-handed 310
Helix 82	AJ1	D	600	612	Right-handed alpha
Helix 83	AJ2	D	620	631	Right-handed alpha
Helix 84	AJ3	D	637	655	Right-handed alpha
Helix 85	AJ4	D	656	659	Right-handed 310
Helix 86	AJ5	D	677	685	Right-handed alpha
Helix 87	AJ6	D	689	693	Right-handed 310
Helix 88	AJ7	D	705	724	Right-handed alpha
Helix 89	AJ8	D	809	817	Right-handed alpha
Helix 90	AJ9	D	826	831	Right-handed alpha
Helix 91	AK1	D	837	852	Right-handed alpha
Helix 92	AK2	D	861	869	Right-handed alpha
Helix 93	AK3	D	870	882	Right-handed alpha
Helix 94	AK4	D	899	903	Right-handed 310
Helix 95	AK5	D	904	910	Right-handed alpha
Helix 96	AK6	D	912	916	Right-handed 310
Helix 97	AK7	D	925	938	Right-handed alpha
Helix 98	AK8	D	1332	1344	Right-handed alpha
Helix 99	AK9	D	1348	1366	Right-handed alpha
Helix 100	AL1	D	1375	1386	Right-handed alpha
Helix 101	AL2	E	433	448	Right-handed alpha
Helix 102	AL3	E	450	455	Right-handed alpha
Helix 103	AL4	E	474	486	Right-handed alpha
Helix 104	AL5	E	505	523	Right-handed alpha
Helix 105	AL6	E	532	536	Right-handed 310
Helix 106	AL7	E	545	561	Right-handed alpha
Helix 107	AL8	E	562	565	Right-handed 310
Helix 108	AL9	E	600	612	Right-handed alpha
Helix 109	AM1	E	620	631	Right-handed alpha
Helix 110	AM2	E	635	655	Right-handed alpha
Helix 111	AM3	E	675	686	Right-handed alpha
Helix 112	AM4	E	705	723	Right-handed alpha
Helix 113	AM5	E	800	804	Right-handed 310
Helix 114	AM6	E	808	817	Right-handed alpha
Helix 115	AM7	E	826	831	Right-handed alpha
Helix 116	AM8	E	837	852	Right-handed alpha
Helix 117	AM9	E	861	866	Right-handed alpha
Helix 118	AN1	E	870	881	Right-handed alpha
Helix 119	AN2	E	904	909	Right-handed alpha
Helix 120	AN3	E	910	911	Right-handed 310
Helix 121	AN4	E	912	916	Right-handed 310
Helix 122	AN5	E	925	935	Right-handed alpha
Helix 123	AN6	E	939	943	Right-handed 310
Helix 124	AN7	E	1331	1344	Right-handed alpha
Helix 125	AN8	E	1348	1366	Right-handed alpha
Helix 126	AN9	E	1375	1385	Right-handed alpha
Helix 127	AO1	F	431	441	Right-handed alpha
Helix 128	AO2	F	472	485	Right-handed alpha
Helix 129	AO3	F	507	523	Right-handed alpha
Helix 130	AO4	F	532	537	Right-handed alpha
Helix 131	AO5	F	545	559	Right-handed alpha
Helix 132	AO6	F	560	562	Right-handed 310
Helix 133	AO7	F	576	580	Right-handed 310
Helix 134	AO8	F	602	612	Right-handed alpha
Helix 135	AO9	F	620	631	Right-handed alpha
Helix 136	AP1	F	637	654	Right-handed alpha
Helix 137	AP2	F	655	659	Right-handed 310
Helix 138	AP3	F	676	681	Right-handed alpha
Helix 139	AP4	F	682	686	Right-handed 310
Helix 140	AP5	F	705	724	Right-handed alpha
Helix 141	AP6	F	808	816	Right-handed alpha
Helix 142	AP7	F	840	852	Right-handed alpha
Helix 143	AP8	F	861	866	Right-handed alpha
Helix 144	AP9	F	867	869	Right-handed 310
Helix 145	AQ1	F	871	883	Right-handed alpha
Helix 146	AQ2	F	899	903	Right-handed 310
Helix 147	AQ3	F	904	909	Right-handed alpha
Helix 148	AQ4	F	925	934	Right-handed alpha
Helix 149	AQ5	F	1332	1344	Right-handed alpha
Helix 150	AQ6	F	1348	1366	Right-handed alpha
Helix 151	AQ7	F	1374	1386	Right-handed alpha

There are 13 sheets in PDB entry 8JUY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	464	first strand
Strand 2	A	569	572	parallel
Strand 3	A	527	530	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	796	798	first strand
Strand 2	A	918	920	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	822	824	first strand
Strand 2	A	856	858	parallel
Strand 3	A	891	893	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	494	496	first strand
Strand 2	B	527	530	parallel
Strand 3	B	569	574	parallel
Strand 4	B	462	466	parallel
Strand 5	B	593	595	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	821	824	first strand
Strand 2	B	855	859	parallel
Strand 3	B	890	896	parallel
Strand 4	B	796	799	parallel
Strand 5	B	918	921	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	494	496	first strand
Strand 2	C	527	530	parallel
Strand 3	C	569	574	parallel
Strand 4	C	462	466	parallel
Strand 5	C	592	595	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	822	824	first strand
Strand 2	C	855	860	parallel
Strand 3	C	890	896	parallel
Strand 4	C	794	798	parallel
Strand 5	C	919	920	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	527	531	first strand
Strand 2	D	569	573	parallel
Strand 3	D	462	466	parallel
Strand 4	D	593	595	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	821	824	first strand
Strand 2	D	855	859	parallel
Strand 3	D	890	896	parallel
Strand 4	D	794	798	parallel
Strand 5	D	918	919	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	492	495	first strand
Strand 2	E	526	529	parallel
Strand 3	E	568	572	parallel
Strand 4	E	462	466	parallel
Strand 5	E	593	595	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	821	824	first strand
Strand 2	E	855	859	parallel
Strand 3	E	890	895	parallel
Strand 4	E	794	798	parallel
Strand 5	E	918	920	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	570	573	first strand
Strand 2	F	462	466	parallel
Strand 3	F	594	595	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	855	859	first strand
Strand 2	F	890	896	parallel
Strand 3	F	796	798	parallel
Strand 4	F	918	920	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JUY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JUY