Analysis of interatomic Contacts of Structural Units in PDB entry:
8JV4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JV4 entry

There is 1 chain in PDB entry 8JV4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 22HIS 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8JV4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 41Right-handed alpha
Helix 2
AA2
A
41 50Right-handed alpha
Helix 3
AA3
A
62 71Right-handed alpha
Helix 4
AA4
A
83 92Right-handed alpha
Helix 5
AA5
A
99 104Right-handed alpha
Helix 6
AA6
A
112 117Right-handed alpha
Helix 7
AA7
A
150 156Right-handed alpha
Helix 8
AA8
A
172 181Right-handed alpha
Helix 9
AA9
A
193 199Right-handed 310
Helix 10
AB1
A
200 217Right-handed alpha
Helix 11
AB2
A
229 237Right-handed alpha
Helix 12
AB3
A
247 256Right-handed alpha
Helix 13
AB4
A
286 296Right-handed alpha
Helix 14
AB5
A
297 305Right-handed alpha
Helix 15
AB6
A
314 324Right-handed alpha
Helix 16
AB7
A
335 339Right-handed 310
Helix 17
AB8
A
342 347Right-handed 310
Helix 18
AB9
A
353 378Right-handed alpha
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There are 2 sheets in PDB entry 8JV4. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 57first strand
Strand 2
A
24 28parallel
Strand 3
A
78 82parallel
Strand 4
A
260 276anti-parallel
Strand 5
A
127 139anti-parallel
Strand 6
A
311 312anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 225first strand
Strand 2
A
164 167parallel
Strand 3
A
242 246parallel
Strand 4
A
127 139anti-parallel
Strand 5
A
260 276anti-parallel
Strand 6
A
350 351parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il