Analysis of interatomic Contacts of Structural Units in PDB entry:
8JV5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JV5 entry

There are 3 chains in PDB entry 8JV5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 43	TRP 358
B	ILE 43	TRP 358
C	VAL 42	TRP 358

There are 21 helices in PDB entry 8JV5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	50	Right-handed alpha
Helix 2	AA2	A	182	187	Right-handed 310
Helix 3	AA3	A	213	219	Right-handed alpha
Helix 4	AA4	A	235	241	Right-handed alpha
Helix 5	AA5	A	245	253	Right-handed alpha
Helix 6	AA6	A	269	273	Right-handed 310
Helix 7	AA7	A	335	358	Right-handed alpha
Helix 8	AA8	B	44	50	Right-handed alpha
Helix 9	AA9	B	182	187	Right-handed 310
Helix 10	AB1	B	213	219	Right-handed alpha
Helix 11	AB2	B	235	241	Right-handed alpha
Helix 12	AB3	B	245	253	Right-handed alpha
Helix 13	AB4	B	269	273	Right-handed 310
Helix 14	AB5	B	335	358	Right-handed alpha
Helix 15	AB6	C	43	50	Right-handed alpha
Helix 16	AB7	C	182	187	Right-handed 310
Helix 17	AB8	C	213	219	Right-handed alpha
Helix 18	AB9	C	235	241	Right-handed alpha
Helix 19	AC1	C	245	253	Right-handed alpha
Helix 20	AC2	C	269	273	Right-handed 310
Helix 21	AC3	C	335	358	Right-handed alpha

There are 15 sheets in PDB entry 8JV5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	62	first strand
Strand 2	A	310	333	anti-parallel
Strand 3	A	254	265	parallel
Strand 4	A	276	281	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	153	first strand
Strand 2	A	161	168	anti-parallel
Strand 3	A	101	120	anti-parallel
Strand 4	A	310	333	anti-parallel
Strand 5	A	296	304	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	72	first strand
Strand 2	A	189	198	anti-parallel
Strand 3	A	203	206	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	72	first strand
Strand 2	A	189	198	anti-parallel
Strand 3	A	232	234	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	77	first strand
Strand 2	A	85	87	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	62	first strand
Strand 2	B	310	333	anti-parallel
Strand 3	B	254	265	parallel
Strand 4	B	276	281	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	153	first strand
Strand 2	B	161	168	anti-parallel
Strand 3	B	101	120	anti-parallel
Strand 4	B	310	333	anti-parallel
Strand 5	B	296	304	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	72	first strand
Strand 2	B	189	198	anti-parallel
Strand 3	B	203	206	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	72	first strand
Strand 2	B	189	198	anti-parallel
Strand 3	B	232	234	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	77	first strand
Strand 2	B	85	87	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	62	first strand
Strand 2	C	310	333	anti-parallel
Strand 3	C	254	265	parallel
Strand 4	C	276	281	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	153	first strand
Strand 2	C	161	168	anti-parallel
Strand 3	C	101	120	anti-parallel
Strand 4	C	310	333	anti-parallel
Strand 5	C	296	304	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	72	first strand
Strand 2	C	189	198	anti-parallel
Strand 3	C	203	206	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	72	first strand
Strand 2	C	189	198	anti-parallel
Strand 3	C	232	234	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	77	first strand
Strand 2	C	85	87	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JV5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JV5