Analysis of interatomic Contacts of Structural Units in PDB entry:
8JV6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JV6 entry

There are 3 chains in PDB entry 8JV6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 43	TRP 358
B	ILE 43	TRP 358
C	ILE 43	TRP 358

There are 22 helices in PDB entry 8JV6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	54	Right-handed alpha
Helix 2	AA2	A	124	128	Right-handed 310
Helix 3	AA3	A	182	187	Right-handed 310
Helix 4	AA4	A	213	219	Right-handed alpha
Helix 5	AA5	A	235	241	Right-handed alpha
Helix 6	AA6	A	245	250	Right-handed alpha
Helix 7	AA7	A	269	273	Right-handed 310
Helix 8	AA8	A	334	358	Right-handed alpha
Helix 9	AA9	B	44	54	Right-handed alpha
Helix 10	AB1	B	182	187	Right-handed 310
Helix 11	AB2	B	213	219	Right-handed alpha
Helix 12	AB3	B	235	241	Right-handed alpha
Helix 13	AB4	B	245	250	Right-handed alpha
Helix 14	AB5	B	269	273	Right-handed 310
Helix 15	AB6	B	334	358	Right-handed alpha
Helix 16	AB7	C	44	54	Right-handed alpha
Helix 17	AB8	C	182	187	Right-handed 310
Helix 18	AB9	C	213	219	Right-handed alpha
Helix 19	AC1	C	235	241	Right-handed alpha
Helix 20	AC2	C	245	253	Right-handed alpha
Helix 21	AC3	C	269	273	Right-handed 310
Helix 22	AC4	C	334	358	Right-handed alpha

There are 17 sheets in PDB entry 8JV6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	61	first strand
Strand 2	A	330	333	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	72	first strand
Strand 2	A	189	198	anti-parallel
Strand 3	A	203	206	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	72	first strand
Strand 2	A	189	198	anti-parallel
Strand 3	A	232	234	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	79	first strand
Strand 2	A	83	87	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	153	first strand
Strand 2	A	161	168	anti-parallel
Strand 3	A	101	119	anti-parallel
Strand 4	A	310	328	anti-parallel
Strand 5	A	254	262	parallel
Strand 6	A	276	281	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	153	first strand
Strand 2	A	161	168	anti-parallel
Strand 3	A	101	119	anti-parallel
Strand 4	A	310	328	anti-parallel
Strand 5	A	296	304	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	62	first strand
Strand 2	B	310	333	anti-parallel
Strand 3	B	254	262	parallel
Strand 4	B	276	281	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	153	first strand
Strand 2	B	161	168	anti-parallel
Strand 3	B	101	119	anti-parallel
Strand 4	B	310	333	anti-parallel
Strand 5	B	296	304	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	72	first strand
Strand 2	B	189	198	anti-parallel
Strand 3	B	203	206	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	72	first strand
Strand 2	B	189	198	anti-parallel
Strand 3	B	232	234	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	79	first strand
Strand 2	B	83	87	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	61	first strand
Strand 2	C	330	333	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	72	first strand
Strand 2	C	189	198	anti-parallel
Strand 3	C	203	206	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	72	first strand
Strand 2	C	189	198	anti-parallel
Strand 3	C	232	234	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	79	first strand
Strand 2	C	83	87	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	153	first strand
Strand 2	C	161	168	anti-parallel
Strand 3	C	101	119	anti-parallel
Strand 4	C	310	328	anti-parallel
Strand 5	C	254	262	parallel
Strand 6	C	276	281	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	153	first strand
Strand 2	C	161	168	anti-parallel
Strand 3	C	101	119	anti-parallel
Strand 4	C	310	328	anti-parallel
Strand 5	C	296	304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JV6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JV6