Analysis of interatomic Contacts of Structural Units in PDB entry:
8JV8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JV8 entry

There are 3 chains in PDB entry 8JV8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 31	PHE 350
B	TRP 31	PHE 350
C	TRP 31	PHE 350

There are 18 helices in PDB entry 8JV8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	49	Right-handed alpha
Helix 2	AA2	A	131	135	Right-handed 310
Helix 3	AA3	A	182	187	Right-handed 310
Helix 4	AA4	A	231	239	Right-handed alpha
Helix 5	AA5	A	241	246	Right-handed alpha
Helix 6	AA6	A	329	350	Right-handed alpha
Helix 7	AA7	B	32	49	Right-handed alpha
Helix 8	AA8	B	131	135	Right-handed 310
Helix 9	AA9	B	182	187	Right-handed 310
Helix 10	AB1	B	231	239	Right-handed alpha
Helix 11	AB2	B	241	247	Right-handed alpha
Helix 12	AB3	B	329	350	Right-handed alpha
Helix 13	AB4	C	32	49	Right-handed alpha
Helix 14	AB5	C	131	135	Right-handed 310
Helix 15	AB6	C	182	187	Right-handed 310
Helix 16	AB7	C	231	239	Right-handed alpha
Helix 17	AB8	C	241	246	Right-handed alpha
Helix 18	AB9	C	329	350	Right-handed alpha

There are 18 sheets in PDB entry 8JV8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	66	first strand
Strand 2	A	189	198	anti-parallel
Strand 3	A	203	206	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	66	first strand
Strand 2	A	189	198	anti-parallel
Strand 3	A	229	230	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	77	first strand
Strand 2	A	80	88	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	102	first strand
Strand 2	A	316	326	anti-parallel
Strand 3	A	251	261	parallel
Strand 4	A	271	277	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	110	first strand
Strand 2	A	310	313	anti-parallel
Strand 3	A	292	295	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	154	first strand
Strand 2	A	160	168	anti-parallel
Strand 3	A	114	119	anti-parallel
Strand 4	A	304	307	anti-parallel
Strand 5	A	298	301	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	66	first strand
Strand 2	B	189	198	anti-parallel
Strand 3	B	203	206	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	66	first strand
Strand 2	B	189	198	anti-parallel
Strand 3	B	229	230	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	77	first strand
Strand 2	B	80	88	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	110	first strand
Strand 2	B	310	326	anti-parallel
Strand 3	B	251	261	parallel
Strand 4	B	271	277	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	110	first strand
Strand 2	B	310	326	anti-parallel
Strand 3	B	292	295	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	154	first strand
Strand 2	B	160	168	anti-parallel
Strand 3	B	114	119	anti-parallel
Strand 4	B	304	307	anti-parallel
Strand 5	B	298	301	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	66	first strand
Strand 2	C	189	198	anti-parallel
Strand 3	C	203	206	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	66	first strand
Strand 2	C	189	198	anti-parallel
Strand 3	C	229	230	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	77	first strand
Strand 2	C	80	88	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	C	316	326	anti-parallel
Strand 3	C	251	261	parallel
Strand 4	C	271	277	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	110	first strand
Strand 2	C	310	313	anti-parallel
Strand 3	C	292	295	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	154	first strand
Strand 2	C	160	168	anti-parallel
Strand 3	C	114	119	anti-parallel
Strand 4	C	304	307	anti-parallel
Strand 5	C	298	301	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JV8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JV8