Analysis of interatomic Contacts of Structural Units in PDB entry:
8JVC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JVC entry

There is 1 chain in PDB entry 8JVC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 3ARG 174
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8JVC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 15Right-handed alpha
Helix 2
AA2
A
28 41Right-handed alpha
Helix 3
AA3
A
47 57Right-handed alpha
Helix 4
AA4
A
76 83Right-handed alpha
Helix 5
AA5
A
97 112Right-handed alpha
Helix 6
AA6
A
124 126Right-handed 310
Helix 7
AA7
A
127 135Right-handed alpha
Helix 8
AA8
A
156 169Right-handed alpha
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There are 2 sheets in PDB entry 8JVC. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
A
4 6anti-parallel
Strand 3
A
171 173anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
149 154anti-parallel
Strand 3
A
140 145anti-parallel
Strand 4
A
43 46parallel
Strand 5
A
63 67parallel
Strand 6
A
116 122parallel
Strand 7
A
84 90parallel
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