Analysis of interatomic Contacts of Structural Units in PDB entry:
8JVH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JVH entry

There is 1 chain in PDB entry 8JVH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 13ALA 1418
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 8JVH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 24Right-handed alpha
Helix 2
AA2
A
27 37Right-handed alpha
Helix 3
AA3
A
44 48Right-handed 310
Helix 4
AA4
A
55 66Right-handed alpha
Helix 5
AA5
A
67 69Right-handed 310
Helix 6
AA6
A
70 86Right-handed alpha
Helix 7
AA7
A
91 137Right-handed alpha
Helix 8
AA8
A
140 146Right-handed alpha
Helix 9
AA9
A
147 149Right-handed 310
Helix 10
AB1
A
150 159Right-handed alpha
Helix 11
AB2
A
167 170Right-handed 310
Helix 12
AB3
A
171 191Right-handed alpha
Helix 13
AB4
A
191 197Right-handed alpha
Helix 14
AB5
A
202 240Right-handed alpha
Helix 15
AB6
A
241 246Right-handed alpha
Helix 16
AB7
A
253 303Right-handed alpha
Helix 17
AB8
A
315 318Right-handed 310
Helix 18
AB9
A
319 334Right-handed alpha
Helix 19
AC1
A
336 351Right-handed alpha
Helix 20
AC2
A
418 427Right-handed alpha
Helix 21
AC3
A
444 448Right-handed 310
Helix 22
AC4
A
449 454Right-handed alpha
Helix 23
AC5
A
471 477Right-handed alpha
Helix 24
AC6
A
479 488Right-handed alpha
Helix 25
AC7
A
522 527Right-handed 310
Helix 26
AC8
A
529 539Right-handed alpha
Helix 27
AC9
A
541 548Right-handed alpha
Helix 28
AD1
A
564 579Right-handed alpha
Helix 29
AD2
A
594 607Right-handed alpha
Helix 30
AD3
A
685 694Right-handed alpha
Helix 31
AD4
A
772 783Right-handed alpha
Helix 32
AD5
A
785 803Right-handed alpha
Helix 33
AD6
A
804 815Right-handed alpha
Helix 34
AD7
A
822 873Right-handed alpha
Helix 35
AD8
A
875 881Right-handed alpha
Helix 36
AD9
A
885 903Right-handed alpha
Helix 37
AE1
A
903 927Right-handed alpha
Helix 38
AE2
A
929 945Right-handed alpha
Helix 39
AE3
A
948 963Right-handed alpha
Helix 40
AE4
A
986 991Right-handed alpha
Helix 41
AE5
A
992 997Right-handed alpha
Helix 42
AE6
A
1007 1014Right-handed alpha
Helix 43
AE7
A
1016 1036Right-handed alpha
Helix 44
AE8
A
1037 1054Right-handed alpha
Helix 45
AE9
A
1060 1081Right-handed alpha
Helix 46
AF1
A
1086 1097Right-handed alpha
Helix 47
AF2
A
1169 1175Right-handed alpha
Helix 48
AF3
A
1240 1242Right-handed 310
Helix 49
AF4
A
1264 1270Right-handed alpha
Helix 50
AF5
A
1277 1288Right-handed alpha
Helix 51
AF6
A
1293 1297Right-handed 310
Helix 52
AF7
A
1299 1303Right-handed 310
Helix 53
AF8
A
1306 1310Right-handed 310
Helix 54
AF9
A
1313 1327Right-handed alpha
Helix 55
AG1
A
1343 1358Right-handed alpha
Helix 56
AG2
A
1371 1378Right-handed alpha
Helix 57
AG3
A
1410 1417Right-handed alpha
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There are 7 sheets in PDB entry 8JVH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 379first strand
Strand 2
A
402 403anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 411first strand
Strand 2
A
617 619parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 460first strand
Strand 2
A
583 586parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
635 636first strand
Strand 2
A
669 670anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1149 1151first strand
Strand 2
A
1126 1131anti-parallel
Strand 3
A
1230 1234anti-parallel
Strand 4
A
1237 1238anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1158 1161first strand
Strand 2
A
1381 1385parallel
Strand 3
A
1393 1394anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1251 1254first strand
Strand 2
A
1332 1335parallel
Strand 3
A
1364 1366parallel
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