Analysis of interatomic Contacts of Structural Units in PDB entry:
8JVI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JVI entry

There are 4 chains in PDB entry 8JVI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 VAL 148TRP 788
C
 VAL 148TRP 788
D
 VAL 148TRP 788
A
 VAL 148TRP 788
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are128 helices in PDB entry 8JVI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
150 161Right-handed alpha
Helix 2
AA2
B
168 176Right-handed alpha
Helix 3
AA3
B
193 201Right-handed alpha
Helix 4
AA4
B
208 221Right-handed alpha
Helix 5
AA5
B
222 227Right-handed alpha
Helix 6
AA6
B
240 248Right-handed alpha
Helix 7
AA7
B
250 260Right-handed alpha
Helix 8
AA8
B
275 279Right-handed 310
Helix 9
AA9
B
287 295Right-handed alpha
Helix 10
AB1
B
297 306Right-handed alpha
Helix 11
AB2
B
323 332Right-handed alpha
Helix 12
AB3
B
335 356Right-handed alpha
Helix 13
AB4
B
361 365Right-handed 310
Helix 14
AB5
B
372 380Right-handed alpha
Helix 15
AB6
B
382 391Right-handed alpha
Helix 16
AB7
B
432 439Right-handed alpha
Helix 17
AB8
B
442 444Right-handed 310
Helix 18
AB9
B
445 450Right-handed alpha
Helix 19
AC1
B
452 466Right-handed alpha
Helix 20
AC2
B
466 490Right-handed alpha
Helix 21
AC3
B
506 534Right-handed alpha
Helix 22
AC4
B
549 570Right-handed alpha
Helix 23
AC5
B
573 586Right-handed alpha
Helix 24
AC6
B
587 594Right-handed 310
Helix 25
AC7
B
596 613Right-handed alpha
Helix 26
AC8
B
613 634Right-handed alpha
Helix 27
AC9
B
665 679Right-handed alpha
Helix 28
AD1
B
683 689Right-handed 310
Helix 29
AD2
B
691 725Right-handed alpha
Helix 30
AD3
B
725 748Right-handed alpha
Helix 31
AD4
B
749 756Right-handed alpha
Helix 32
AD5
B
767 771Right-handed 310
Helix 33
AD6
C
150 160Right-handed alpha
Helix 34
AD7
C
168 176Right-handed alpha
Helix 35
AD8
C
193 201Right-handed alpha
Helix 36
AD9
C
208 221Right-handed alpha
Helix 37
AE1
C
222 227Right-handed alpha
Helix 38
AE2
C
233 237Right-handed 310
Helix 39
AE3
C
240 248Right-handed alpha
Helix 40
AE4
C
251 260Right-handed alpha
Helix 41
AE5
C
270 274Right-handed 310
Helix 42
AE6
C
287 294Right-handed alpha
Helix 43
AE7
C
297 306Right-handed alpha
Helix 44
AE8
C
323 332Right-handed alpha
Helix 45
AE9
C
335 356Right-handed alpha
Helix 46
AF1
C
361 365Right-handed 310
Helix 47
AF2
C
372 381Right-handed alpha
Helix 48
AF3
C
382 391Right-handed alpha
Helix 49
AF4
C
432 440Right-handed alpha
Helix 50
AF5
C
442 450Right-handed 310
Helix 51
AF6
C
452 466Right-handed alpha
Helix 52
AF7
C
466 490Right-handed alpha
Helix 53
AF8
C
507 531Right-handed alpha
Helix 54
AF9
C
532 534Right-handed 310
Helix 55
AG1
C
546 570Right-handed alpha
Helix 56
AG2
C
573 590Right-handed alpha
Helix 57
AG3
C
591 595Right-handed 310
Helix 58
AG4
C
596 614Right-handed alpha
Helix 59
AG5
C
615 633Right-handed alpha
Helix 60
AG6
C
665 679Right-handed alpha
Helix 61
AG7
C
683 687Right-handed 310
Helix 62
AG8
C
691 748Right-handed alpha
Helix 63
AG9
C
749 756Right-handed alpha
Helix 64
AH1
C
767 771Right-handed 310
Helix 65
AH2
D
150 161Right-handed alpha
Helix 66
AH3
D
168 176Right-handed alpha
Helix 67
AH4
D
193 201Right-handed alpha
Helix 68
AH5
D
208 221Right-handed alpha
Helix 69
AH6
D
222 227Right-handed alpha
Helix 70
AH7
D
240 248Right-handed alpha
Helix 71
AH8
D
250 260Right-handed alpha
Helix 72
AH9
D
275 279Right-handed 310
Helix 73
AI1
D
287 295Right-handed alpha
Helix 74
AI2
D
297 306Right-handed alpha
Helix 75
AI3
D
323 332Right-handed alpha
Helix 76
AI4
D
335 356Right-handed alpha
Helix 77
AI5
D
361 365Right-handed 310
Helix 78
AI6
D
372 380Right-handed alpha
Helix 79
AI7
D
382 391Right-handed alpha
Helix 80
AI8
D
432 439Right-handed alpha
Helix 81
AI9
D
442 444Right-handed 310
Helix 82
AJ1
D
445 450Right-handed alpha
Helix 83
AJ2
D
452 466Right-handed alpha
Helix 84
AJ3
D
466 490Right-handed alpha
Helix 85
AJ4
D
506 534Right-handed alpha
Helix 86
AJ5
D
549 570Right-handed alpha
Helix 87
AJ6
D
573 586Right-handed alpha
Helix 88
AJ7
D
587 594Right-handed 310
Helix 89
AJ8
D
596 613Right-handed alpha
Helix 90
AJ9
D
613 634Right-handed alpha
Helix 91
AK1
D
665 679Right-handed alpha
Helix 92
AK2
D
683 689Right-handed 310
Helix 93
AK3
D
691 725Right-handed alpha
Helix 94
AK4
D
725 748Right-handed alpha
Helix 95
AK5
D
749 756Right-handed alpha
Helix 96
AK6
D
767 771Right-handed 310
Helix 97
AK7
A
150 160Right-handed alpha
Helix 98
AK8
A
168 176Right-handed alpha
Helix 99
AK9
A
193 201Right-handed alpha
Helix 100
AL1
A
208 221Right-handed alpha
Helix 101
AL2
A
222 227Right-handed alpha
Helix 102
AL3
A
233 237Right-handed 310
Helix 103
AL4
A
240 248Right-handed alpha
Helix 104
AL5
A
251 260Right-handed alpha
Helix 105
AL6
A
270 274Right-handed 310
Helix 106
AL7
A
287 294Right-handed alpha
Helix 107
AL8
A
297 306Right-handed alpha
Helix 108
AL9
A
323 332Right-handed alpha
Helix 109
AM1
A
335 356Right-handed alpha
Helix 110
AM2
A
361 365Right-handed 310
Helix 111
AM3
A
372 381Right-handed alpha
Helix 112
AM4
A
382 391Right-handed alpha
Helix 113
AM5
A
432 440Right-handed alpha
Helix 114
AM6
A
442 450Right-handed 310
Helix 115
AM7
A
452 466Right-handed alpha
Helix 116
AM8
A
466 490Right-handed alpha
Helix 117
AM9
A
507 531Right-handed alpha
Helix 118
AN1
A
532 534Right-handed 310
Helix 119
AN2
A
546 570Right-handed alpha
Helix 120
AN3
A
573 590Right-handed alpha
Helix 121
AN4
A
591 595Right-handed 310
Helix 122
AN5
A
596 614Right-handed alpha
Helix 123
AN6
A
615 633Right-handed alpha
Helix 124
AN7
A
665 679Right-handed alpha
Helix 125
AN8
A
683 687Right-handed 310
Helix 126
AN9
A
691 748Right-handed alpha
Helix 127
AO1
A
749 756Right-handed alpha
Helix 128
AO2
A
767 771Right-handed 310
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There are 4 sheets in PDB entry 8JVI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
405 410first strand
Strand 2
B
415 420anti-parallel
Strand 3
B
774 782anti-parallel
Strand 4
B
760 763anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
405 410first strand
Strand 2
C
415 420anti-parallel
Strand 3
C
774 782anti-parallel
Strand 4
C
760 763anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
405 410first strand
Strand 2
D
415 420anti-parallel
Strand 3
D
774 782anti-parallel
Strand 4
D
760 763anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 410first strand
Strand 2
A
415 420anti-parallel
Strand 3
A
774 782anti-parallel
Strand 4
A
760 763anti-parallel
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