Analysis of interatomic Contacts of Structural Units in PDB entry:
8JVJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JVJ entry

There are 5 chains in PDB entry 8JVJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 146	TRP 788
B	LEU 146	TRP 788
C	LEU 146	TRP 788
D	LEU 146	TRP 788
E	MET 1	ALA 3

There are162 helices in PDB entry 8JVJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	150	161	Right-handed alpha
Helix 2	AA2	A	162	167	Right-handed 310
Helix 3	AA3	A	168	177	Right-handed alpha
Helix 4	AA4	A	182	186	Right-handed 310
Helix 5	AA5	A	193	201	Right-handed alpha
Helix 6	AA6	A	208	221	Right-handed alpha
Helix 7	AA7	A	222	228	Right-handed alpha
Helix 8	AA8	A	240	248	Right-handed alpha
Helix 9	AA9	A	250	260	Right-handed alpha
Helix 10	AB1	A	275	279	Right-handed 310
Helix 11	AB2	A	287	295	Right-handed alpha
Helix 12	AB3	A	297	306	Right-handed alpha
Helix 13	AB4	A	323	332	Right-handed alpha
Helix 14	AB5	A	335	357	Right-handed alpha
Helix 15	AB6	A	361	365	Right-handed 310
Helix 16	AB7	A	372	381	Right-handed alpha
Helix 17	AB8	A	382	392	Right-handed alpha
Helix 18	AB9	A	399	403	Right-handed 310
Helix 19	AC1	A	432	440	Right-handed alpha
Helix 20	AC2	A	442	444	Right-handed 310
Helix 21	AC3	A	445	450	Right-handed alpha
Helix 22	AC4	A	454	466	Right-handed alpha
Helix 23	AC5	A	466	492	Right-handed alpha
Helix 24	AC6	A	504	535	Right-handed alpha
Helix 25	AC7	A	546	569	Right-handed alpha
Helix 26	AC8	A	573	589	Right-handed alpha
Helix 27	AC9	A	590	594	Right-handed 310
Helix 28	AD1	A	596	611	Right-handed alpha
Helix 29	AD2	A	613	636	Right-handed alpha
Helix 30	AD3	A	663	679	Right-handed alpha
Helix 31	AD4	A	682	687	Right-handed alpha
Helix 32	AD5	A	691	719	Right-handed alpha
Helix 33	AD6	A	719	748	Right-handed alpha
Helix 34	AD7	A	749	756	Right-handed alpha
Helix 35	AD8	B	150	161	Right-handed alpha
Helix 36	AD9	B	163	167	Right-handed 310
Helix 37	AE1	B	168	177	Right-handed alpha
Helix 38	AE2	B	182	186	Right-handed 310
Helix 39	AE3	B	193	201	Right-handed alpha
Helix 40	AE4	B	208	221	Right-handed alpha
Helix 41	AE5	B	222	228	Right-handed alpha
Helix 42	AE6	B	240	248	Right-handed alpha
Helix 43	AE7	B	250	259	Right-handed alpha
Helix 44	AE8	B	275	279	Right-handed 310
Helix 45	AE9	B	287	295	Right-handed alpha
Helix 46	AF1	B	297	306	Right-handed alpha
Helix 47	AF2	B	323	332	Right-handed alpha
Helix 48	AF3	B	335	357	Right-handed alpha
Helix 49	AF4	B	361	365	Right-handed 310
Helix 50	AF5	B	372	381	Right-handed alpha
Helix 51	AF6	B	382	392	Right-handed alpha
Helix 52	AF7	B	399	403	Right-handed 310
Helix 53	AF8	B	432	440	Right-handed alpha
Helix 54	AF9	B	442	450	Right-handed alpha
Helix 55	AG1	B	452	491	Right-handed alpha
Helix 56	AG2	B	504	535	Right-handed alpha
Helix 57	AG3	B	546	569	Right-handed alpha
Helix 58	AG4	B	572	589	Right-handed alpha
Helix 59	AG5	B	590	594	Right-handed 310
Helix 60	AG6	B	596	612	Right-handed alpha
Helix 61	AG7	B	613	636	Right-handed alpha
Helix 62	AG8	B	663	679	Right-handed alpha
Helix 63	AG9	B	682	689	Right-handed alpha
Helix 64	AH1	B	691	720	Right-handed alpha
Helix 65	AH2	B	721	748	Right-handed alpha
Helix 66	AH3	B	749	756	Right-handed alpha
Helix 67	AH4	C	150	161	Right-handed alpha
Helix 68	AH5	C	162	167	Right-handed 310
Helix 69	AH6	C	168	177	Right-handed alpha
Helix 70	AH7	C	182	186	Right-handed 310
Helix 71	AH8	C	193	201	Right-handed alpha
Helix 72	AH9	C	208	221	Right-handed alpha
Helix 73	AI1	C	222	228	Right-handed alpha
Helix 74	AI2	C	240	248	Right-handed alpha
Helix 75	AI3	C	250	259	Right-handed alpha
Helix 76	AI4	C	275	279	Right-handed 310
Helix 77	AI5	C	287	294	Right-handed alpha
Helix 78	AI6	C	297	306	Right-handed alpha
Helix 79	AI7	C	323	332	Right-handed alpha
Helix 80	AI8	C	335	357	Right-handed alpha
Helix 81	AI9	C	361	365	Right-handed 310
Helix 82	AJ1	C	372	381	Right-handed alpha
Helix 83	AJ2	C	382	392	Right-handed alpha
Helix 84	AJ3	C	399	403	Right-handed 310
Helix 85	AJ4	C	432	440	Right-handed alpha
Helix 86	AJ5	C	442	450	Right-handed alpha
Helix 87	AJ6	C	452	466	Right-handed alpha
Helix 88	AJ7	C	466	491	Right-handed alpha
Helix 89	AJ8	C	504	535	Right-handed alpha
Helix 90	AJ9	C	546	570	Right-handed alpha
Helix 91	AK1	C	573	587	Right-handed alpha
Helix 92	AK2	C	590	596	Right-handed 310
Helix 93	AK3	C	597	611	Right-handed alpha
Helix 94	AK4	C	613	636	Right-handed alpha
Helix 95	AK5	C	663	679	Right-handed alpha
Helix 96	AK6	C	691	718	Right-handed alpha
Helix 97	AK7	C	721	748	Right-handed alpha
Helix 98	AK8	C	749	756	Right-handed alpha
Helix 99	AK9	D	150	161	Right-handed alpha
Helix 100	AL1	D	162	167	Right-handed 310
Helix 101	AL2	D	168	177	Right-handed alpha
Helix 102	AL3	D	182	186	Right-handed 310
Helix 103	AL4	D	193	201	Right-handed alpha
Helix 104	AL5	D	208	221	Right-handed alpha
Helix 105	AL6	D	222	228	Right-handed alpha
Helix 106	AL7	D	240	248	Right-handed alpha
Helix 107	AL8	D	250	260	Right-handed alpha
Helix 108	AL9	D	275	279	Right-handed 310
Helix 109	AM1	D	287	294	Right-handed alpha
Helix 110	AM2	D	297	306	Right-handed alpha
Helix 111	AM3	D	323	332	Right-handed alpha
Helix 112	AM4	D	335	357	Right-handed alpha
Helix 113	AM5	D	361	365	Right-handed 310
Helix 114	AM6	D	372	381	Right-handed alpha
Helix 115	AM7	D	382	392	Right-handed alpha
Helix 116	AM8	D	399	403	Right-handed 310
Helix 117	AM9	D	432	440	Right-handed alpha
Helix 118	AN1	D	442	450	Right-handed alpha
Helix 119	AN2	D	452	466	Right-handed alpha
Helix 120	AN3	D	466	491	Right-handed alpha
Helix 121	AN4	D	504	535	Right-handed alpha
Helix 122	AN5	D	546	570	Right-handed alpha
Helix 123	AN6	D	573	587	Right-handed alpha
Helix 124	AN7	D	588	594	Right-handed 310
Helix 125	AN8	D	596	611	Right-handed alpha
Helix 126	AN9	D	613	635	Right-handed alpha
Helix 127	AO1	D	663	679	Right-handed alpha
Helix 128	AO2	D	691	719	Right-handed alpha
Helix 129	AO3	D	719	748	Right-handed alpha
Helix 130	AO4	D	749	756	Right-handed alpha
Helix 131	AO5	E	17	28	Right-handed alpha
Helix 132	AO6	E	69	74	Right-handed 310
Helix 133	AO7	E	88	92	Right-handed 310
Helix 134	AO8	E	98	107	Right-handed alpha
Helix 135	AO9	E	120	123	Right-handed 310
Helix 136	AP1	E	124	134	Right-handed alpha
Helix 137	AP2	E	140	152	Right-handed alpha
Helix 138	AP3	E	166	180	Right-handed alpha
Helix 139	AP4	F	17	27	Right-handed alpha
Helix 140	AP5	F	69	74	Right-handed 310
Helix 141	AP6	F	89	94	Right-handed alpha
Helix 142	AP7	F	98	107	Right-handed alpha
Helix 143	AP8	F	119	123	Right-handed 310
Helix 144	AP9	F	124	134	Right-handed alpha
Helix 145	AQ1	F	140	152	Right-handed alpha
Helix 146	AQ2	F	166	180	Right-handed alpha
Helix 147	AQ3	G	17	28	Right-handed alpha
Helix 148	AQ4	G	69	73	Right-handed 310
Helix 149	AQ5	G	89	98	Right-handed alpha
Helix 150	AQ6	G	98	107	Right-handed alpha
Helix 151	AQ7	G	119	123	Right-handed 310
Helix 152	AQ8	G	124	134	Right-handed alpha
Helix 153	AQ9	G	140	152	Right-handed alpha
Helix 154	AR1	G	166	180	Right-handed alpha
Helix 155	AR2	H	17	28	Right-handed alpha
Helix 156	AR3	H	69	73	Right-handed 310
Helix 157	AR4	H	89	98	Right-handed alpha
Helix 158	AR5	H	98	107	Right-handed alpha
Helix 159	AR6	H	119	123	Right-handed 310
Helix 160	AR7	H	124	134	Right-handed alpha
Helix 161	AR8	H	140	152	Right-handed alpha
Helix 162	AR9	H	166	180	Right-handed alpha

There are 8 sheets in PDB entry 8JVJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	407	first strand
Strand 2	A	415	420	anti-parallel
Strand 3	A	777	782	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	407	first strand
Strand 2	B	415	420	anti-parallel
Strand 3	B	777	782	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	405	410	first strand
Strand 2	C	415	420	anti-parallel
Strand 3	C	777	782	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	410	first strand
Strand 2	D	415	420	anti-parallel
Strand 3	D	777	782	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	47	first strand
Strand 2	E	52	59	anti-parallel
Strand 3	E	4	12	parallel
Strand 4	E	79	85	parallel
Strand 5	E	112	117	parallel
Strand 6	E	155	158	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	42	47	first strand
Strand 2	F	52	59	anti-parallel
Strand 3	F	4	11	parallel
Strand 4	F	79	85	parallel
Strand 5	F	112	117	parallel
Strand 6	F	158	159	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	47	first strand
Strand 2	G	52	59	anti-parallel
Strand 3	G	4	12	parallel
Strand 4	G	79	85	parallel
Strand 5	G	112	117	parallel
Strand 6	G	155	159	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	42	47	first strand
Strand 2	H	52	59	anti-parallel
Strand 3	H	4	12	parallel
Strand 4	H	79	85	parallel
Strand 5	H	115	117	parallel
Strand 6	H	157	159	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JVJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JVJ