Analysis of interatomic Contacts of Structural Units in PDB entry:
8JVM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JVM entry

There are 3 chains in PDB entry 8JVM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	GLU 830	GLY 995
J	GLU 830	GLY 995
Z	GLU 830	GLY 995

There are 5 helices in PDB entry 8JVM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	831	866	Right-handed alpha
Helix 2	AA2	F	918	922	Right-handed 310
Helix 3	AA3	J	831	866	Right-handed alpha
Helix 4	AA4	J	907	911	Right-handed 310
Helix 5	AA5	Z	832	866	Right-handed alpha

There are 10 sheets in PDB entry 8JVM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	882	887	first strand
Strand 2	F	890	895	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	932	934	first strand
Strand 2	Z	937	939	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	955	957	first strand
Strand 2	Z	960	962	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	959	962	first strand
Strand 2	J	954	957	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	988	989	first strand
Strand 2	J	982	984	parallel
Strand 3	Z	972	978	parallel
Strand 4	F	966	978	parallel
Strand 5	J	967	973	parallel
Strand 6	Z	967	968	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	960	962	first strand
Strand 2	F	966	978	parallel
Strand 3	Z	983	984	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	976	978	first strand
Strand 2	F	982	984	parallel
Strand 3	Z	989	990	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	881	886	first strand
Strand 2	J	891	896	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	905	906	first strand
Strand 2	J	913	914	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	881	884	first strand
Strand 2	Z	893	896	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JVM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JVM