Analysis of interatomic Contacts of Structural Units in PDB entry:
8JVT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JVT entry

There are 6 chains in PDB entry 8JVT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4VAL 55
B
 GLY 5VAL 55
C
 PRO 4VAL 55
D
 PRO 4VAL 55
E
 GLY 5VAL 55
F
 GLY 5VAL 55
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 8JVT

There are 5 sheets in PDB entry 8JVT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 39first strand
Strand 2
A
25 29anti-parallel
Strand 3
A
8 16anti-parallel
Strand 4
A
49 54anti-parallel
Strand 5
B
49 54anti-parallel
Strand 6
B
8 16anti-parallel
Strand 7
B
25 30anti-parallel
Strand 8
B
35 39anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 39first strand
Strand 2
C
25 29anti-parallel
Strand 3
C
8 16anti-parallel
Strand 4
C
49 52anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 39first strand
Strand 2
D
25 30anti-parallel
Strand 3
D
8 16anti-parallel
Strand 4
D
49 52anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
35 39first strand
Strand 2
E
25 30anti-parallel
Strand 3
E
8 16anti-parallel
Strand 4
E
49 52anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
35 39first strand
Strand 2
F
25 30anti-parallel
Strand 3
F
8 16anti-parallel
Strand 4
F
49 52anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il