Analysis of interatomic Contacts of Structural Units in PDB entry:
8JVV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JVV entry

There are 12 chains in PDB entry 8JVV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 6VAL 55
B
 GLY 5VAL 55
C
 GLY 5VAL 55
D
 GLY 5VAL 55
E
 LYS 6VAL 55
F
 GLY 5VAL 55
G
 LYS 7VAL 55
H
 LYS 6VAL 55
I
 LYS 7VAL 55
J
 LYS 7VAL 55
K
 LYS 7VAL 55
L
 LYS 7VAL 55
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 8JVV

There are 8 sheets in PDB entry 8JVV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 39first strand
Strand 2
A
25 30anti-parallel
Strand 3
A
9 16anti-parallel
Strand 4
A
49 54anti-parallel
Strand 5
F
49 54anti-parallel
Strand 6
F
9 18anti-parallel
Strand 7
F
23 29anti-parallel
Strand 8
F
35 39anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 39first strand
Strand 2
B
25 30anti-parallel
Strand 3
B
9 16anti-parallel
Strand 4
B
49 54anti-parallel
Strand 5
K
49 54anti-parallel
Strand 6
K
9 16anti-parallel
Strand 7
K
25 29anti-parallel
Strand 8
K
35 39anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 39first strand
Strand 2
C
25 30anti-parallel
Strand 3
C
9 16anti-parallel
Strand 4
C
49 54anti-parallel
Strand 5
H
49 54anti-parallel
Strand 6
H
9 16anti-parallel
Strand 7
H
25 29anti-parallel
Strand 8
H
35 39anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 39first strand
Strand 2
D
25 29anti-parallel
Strand 3
D
9 16anti-parallel
Strand 4
D
49 54anti-parallel
Strand 5
E
49 54anti-parallel
Strand 6
E
9 16anti-parallel
Strand 7
E
25 30anti-parallel
Strand 8
E
35 39anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
35 39first strand
Strand 2
G
25 30anti-parallel
Strand 3
G
9 16anti-parallel
Strand 4
G
49 51anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
35 39first strand
Strand 2
I
25 30anti-parallel
Strand 3
I
9 16anti-parallel
Strand 4
I
49 51anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
35 39first strand
Strand 2
J
25 29anti-parallel
Strand 3
J
9 16anti-parallel
Strand 4
J
49 51anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
35 38first strand
Strand 2
L
23 30anti-parallel
Strand 3
L
9 18anti-parallel
Strand 4
L
49 51anti-parallel
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