Analysis of interatomic Contacts of Structural Units in PDB entry:
8JW0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JW0 entry

There are 29 chains in PDB entry 8JW0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
a	ASP 4	ALA 648
b	TYR 1	SER 617
c	ALA 1	SER 86
d	ALA 1	VAL 257
e	ALA 1	LEU 74
f	ILE 1	ALA 185
h	TYR 1	LYS 132
i	ALA 57	SER 182
j	ARG 1	TRP 70
l	VAL 206	PHE 458
m	GLU 1	PRO 89
A	GLU 15	TYR 194
G	ALA 1	TYR 215
I	LYS 1	GLY 194
K	GLY 13	PHE 184
F	PHE 28	ALA 203
J	ARG 83	GLY 247
M	PHE 115	ILE 282
L	ALA 96	PHE 280
D	PHE 34	TYR 193
B	VAL 91	TYR 262
H	PHE 64	TRP 223
N	PHE 30	TRP 189
O	GLU 80	TYR 240
T	GLU 96	TRP 254
Q	PHE 42	TRP 203
C	PHE 95	TRP 254
P	PHE 27	TRP 186
E	VAL 96	PHE 237

There are223 helices in PDB entry 8JW0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	a	4	10	Right-handed alpha
Helix 2	AA2	a	10	19	Right-handed alpha
Helix 3	AA3	a	20	23	Right-handed 310
Helix 4	AA4	a	24	34	Right-handed alpha
Helix 5	AA5	a	43	73	Right-handed alpha
Helix 6	AA6	a	75	82	Right-handed alpha
Helix 7	AA7	a	97	101	Right-handed 310
Helix 8	AA8	a	109	117	Right-handed alpha
Helix 9	AA9	a	121	149	Right-handed alpha
Helix 10	AB1	a	160	170	Right-handed alpha
Helix 11	AB2	a	170	197	Right-handed alpha
Helix 12	AB3	a	203	208	Right-handed 310
Helix 13	AB4	a	212	217	Right-handed alpha
Helix 14	AB5	a	233	256	Right-handed alpha
Helix 15	AB6	a	268	298	Right-handed alpha
Helix 16	AB7	a	307	339	Right-handed alpha
Helix 17	AB8	a	343	345	Right-handed 310
Helix 18	AB9	a	346	352	Right-handed alpha
Helix 19	AC1	a	352	384	Right-handed alpha
Helix 20	AC2	a	386	390	Right-handed 310
Helix 21	AC3	a	400	404	Right-handed 310
Helix 22	AC4	a	425	452	Right-handed alpha
Helix 23	AC5	a	461	466	Right-handed 310
Helix 24	AC6	a	483	518	Right-handed alpha
Helix 25	AC7	a	530	536	Right-handed alpha
Helix 26	AC8	a	538	546	Right-handed alpha
Helix 27	AC9	a	546	556	Right-handed alpha
Helix 28	AD1	a	562	585	Right-handed alpha
Helix 29	AD2	a	586	604	Right-handed alpha
Helix 30	AD3	a	616	647	Right-handed alpha
Helix 31	AD4	b	6	13	Right-handed alpha
Helix 32	AD5	b	18	22	Right-handed 310
Helix 33	AD6	b	27	56	Right-handed alpha
Helix 34	AD7	b	58	65	Right-handed alpha
Helix 35	AD8	b	82	89	Right-handed alpha
Helix 36	AD9	b	97	105	Right-handed alpha
Helix 37	AE1	b	109	133	Right-handed alpha
Helix 38	AE2	b	135	140	Right-handed alpha
Helix 39	AE3	b	143	161	Right-handed alpha
Helix 40	AE4	b	162	166	Right-handed 310
Helix 41	AE5	b	170	175	Right-handed alpha
Helix 42	AE6	b	178	184	Right-handed alpha
Helix 43	AE7	b	200	228	Right-handed alpha
Helix 44	AE8	b	236	262	Right-handed alpha
Helix 45	AE9	b	271	304	Right-handed alpha
Helix 46	AF1	b	310	318	Right-handed alpha
Helix 47	AF2	b	318	350	Right-handed alpha
Helix 48	AF3	b	352	356	Right-handed 310
Helix 49	AF4	b	361	372	Right-handed alpha
Helix 50	AF5	b	398	426	Right-handed alpha
Helix 51	AF6	b	434	438	Right-handed 310
Helix 52	AF7	b	456	488	Right-handed alpha
Helix 53	AF8	b	492	498	Right-handed alpha
Helix 54	AF9	b	500	507	Right-handed alpha
Helix 55	AG1	b	508	513	Right-handed alpha
Helix 56	AG2	b	513	518	Right-handed alpha
Helix 57	AG3	b	528	551	Right-handed alpha
Helix 58	AG4	b	552	570	Right-handed alpha
Helix 59	AG5	b	588	617	Right-handed alpha
Helix 60	AG6	c	14	20	Right-handed alpha
Helix 61	AG7	c	43	47	Right-handed 310
Helix 62	AG8	c	51	56	Right-handed alpha
Helix 63	AG9	c	69	73	Right-handed 310
Helix 64	AH1	d	9	15	Right-handed alpha
Helix 65	AH2	d	20	25	Right-handed alpha
Helix 66	AH3	d	53	57	Right-handed 310
Helix 67	AH4	d	115	129	Right-handed alpha
Helix 68	AH5	d	172	176	Right-handed 310
Helix 69	AH6	d	190	194	Right-handed 310
Helix 70	AH7	d	195	210	Right-handed alpha
Helix 71	AH8	d	234	257	Right-handed alpha
Helix 72	AH9	e	58	60	Right-handed 310
Helix 73	AI1	f	20	24	Right-handed 310
Helix 74	AI2	f	25	29	Right-handed 310
Helix 75	AI3	f	34	37	Right-handed 310
Helix 76	AI4	f	38	59	Right-handed alpha
Helix 77	AI5	f	63	84	Right-handed alpha
Helix 78	AI6	f	108	133	Right-handed alpha
Helix 79	AI7	f	135	141	Right-handed alpha
Helix 80	AI8	f	143	154	Right-handed alpha
Helix 81	AI9	f	156	167	Right-handed alpha
Helix 82	AJ1	f	173	177	Right-handed 310
Helix 83	AJ2	h	4	24	Right-handed alpha
Helix 84	AJ3	h	30	34	Right-handed 310
Helix 85	AJ4	h	54	62	Right-handed 310
Helix 86	AJ5	h	65	89	Right-handed alpha
Helix 87	AJ6	h	92	99	Right-handed alpha
Helix 88	AJ7	h	104	112	Right-handed alpha
Helix 89	AJ8	h	113	130	Right-handed alpha
Helix 90	AJ9	i	61	90	Right-handed alpha
Helix 91	AK1	i	102	119	Right-handed alpha
Helix 92	AK2	i	129	134	Right-handed 310
Helix 93	AK3	i	136	151	Right-handed alpha
Helix 94	AK4	i	159	169	Right-handed alpha
Helix 95	AK5	j	31	40	Right-handed alpha
Helix 96	AK6	j	41	64	Right-handed alpha
Helix 97	AK7	l	207	211	Right-handed 310
Helix 98	AK8	l	219	230	Right-handed alpha
Helix 99	AK9	l	231	235	Right-handed 310
Helix 100	AL1	l	242	252	Right-handed alpha
Helix 101	AL2	l	263	274	Right-handed alpha
Helix 102	AL3	l	282	300	Right-handed alpha
Helix 103	AL4	l	336	341	Right-handed alpha
Helix 104	AL5	l	341	349	Right-handed alpha
Helix 105	AL6	l	359	376	Right-handed alpha
Helix 106	AL7	l	376	381	Right-handed alpha
Helix 107	AL8	l	390	417	Right-handed alpha
Helix 108	AL9	l	430	457	Right-handed alpha
Helix 109	AM1	m	6	13	Right-handed alpha
Helix 110	AM2	m	26	52	Right-handed alpha
Helix 111	AM3	m	65	75	Right-handed alpha
Helix 112	AM4	A	15	20	Right-handed 310
Helix 113	AM5	A	38	43	Right-handed alpha
Helix 114	AM6	A	46	70	Right-handed alpha
Helix 115	AM7	A	71	73	Right-handed 310
Helix 116	AM8	A	86	97	Right-handed alpha
Helix 117	AM9	A	98	120	Right-handed alpha
Helix 118	AN1	A	126	131	Right-handed alpha
Helix 119	AN2	A	147	151	Right-handed 310
Helix 120	AN3	A	154	186	Right-handed alpha
Helix 121	AN4	G	33	39	Right-handed alpha
Helix 122	AN5	G	44	48	Right-handed 310
Helix 123	AN6	G	53	58	Right-handed 310
Helix 124	AN7	G	59	68	Right-handed alpha
Helix 125	AN8	G	75	101	Right-handed alpha
Helix 126	AN9	G	113	124	Right-handed alpha
Helix 127	AO1	G	124	144	Right-handed alpha
Helix 128	AO2	G	148	153	Right-handed 310
Helix 129	AO3	G	176	204	Right-handed alpha
Helix 130	AO4	I	21	25	Right-handed 310
Helix 131	AO5	I	30	35	Right-handed alpha
Helix 132	AO6	I	36	61	Right-handed alpha
Helix 133	AO7	I	75	77	Right-handed 310
Helix 134	AO8	I	78	83	Right-handed alpha
Helix 135	AO9	I	84	102	Right-handed alpha
Helix 136	AP1	I	111	115	Right-handed 310
Helix 137	AP2	I	127	132	Right-handed alpha
Helix 138	AP3	I	135	167	Right-handed alpha
Helix 139	AP4	K	27	31	Right-handed 310
Helix 140	AP5	K	45	50	Right-handed alpha
Helix 141	AP6	K	51	78	Right-handed alpha
Helix 142	AP7	K	84	88	Right-handed 310
Helix 143	AP8	K	90	102	Right-handed alpha
Helix 144	AP9	K	102	126	Right-handed alpha
Helix 145	AQ1	K	146	178	Right-handed alpha
Helix 146	AQ2	F	51	78	Right-handed alpha
Helix 147	AQ3	F	79	81	Right-handed 310
Helix 148	AQ4	F	110	127	Right-handed alpha
Helix 149	AQ5	F	166	195	Right-handed alpha
Helix 150	AQ6	F	198	203	Right-handed alpha
Helix 151	AQ7	J	111	140	Right-handed alpha
Helix 152	AQ8	J	158	166	Right-handed alpha
Helix 153	AQ9	J	167	185	Right-handed alpha
Helix 154	AR1	J	201	205	Right-handed 310
Helix 155	AR2	J	217	243	Right-handed alpha
Helix 156	AR3	M	137	142	Right-handed alpha
Helix 157	AR4	M	145	173	Right-handed alpha
Helix 158	AR5	M	189	196	Right-handed alpha
Helix 159	AR6	M	199	220	Right-handed alpha
Helix 160	AR7	M	242	274	Right-handed alpha
Helix 161	AR8	L	99	104	Right-handed alpha
Helix 162	AR9	L	105	107	Right-handed 310
Helix 163	AS1	L	117	121	Right-handed 310
Helix 164	AS2	L	137	143	Right-handed 310
Helix 165	AS3	L	144	168	Right-handed alpha
Helix 166	AS4	L	169	171	Right-handed 310
Helix 167	AS5	L	176	180	Right-handed 310
Helix 168	AS6	L	187	193	Right-handed 310
Helix 169	AS7	L	194	199	Right-handed alpha
Helix 170	AS8	L	199	215	Right-handed alpha
Helix 171	AS9	L	215	220	Right-handed alpha
Helix 172	AT1	L	241	271	Right-handed alpha
Helix 173	AT2	D	57	88	Right-handed alpha
Helix 174	AT3	D	102	106	Right-handed 310
Helix 175	AT4	D	109	115	Right-handed 310
Helix 176	AT5	D	117	133	Right-handed alpha
Helix 177	AT6	D	141	146	Right-handed 310
Helix 178	AT7	D	157	190	Right-handed alpha
Helix 179	AT8	B	103	107	Right-handed 310
Helix 180	AT9	B	126	154	Right-handed alpha
Helix 181	AU1	B	167	169	Right-handed 310
Helix 182	AU2	B	170	175	Right-handed alpha
Helix 183	AU3	B	178	204	Right-handed alpha
Helix 184	AU4	B	223	255	Right-handed alpha
Helix 185	AU5	H	88	118	Right-handed alpha
Helix 186	AU6	H	147	164	Right-handed alpha
Helix 187	AU7	H	171	176	Right-handed 310
Helix 188	AU8	H	190	220	Right-handed alpha
Helix 189	AU9	N	53	78	Right-handed alpha
Helix 190	AV1	N	107	112	Right-handed alpha
Helix 191	AV2	N	113	130	Right-handed alpha
Helix 192	AV3	N	155	185	Right-handed alpha
Helix 193	AV4	O	102	133	Right-handed alpha
Helix 194	AV5	O	154	158	Right-handed 310
Helix 195	AV6	O	162	179	Right-handed alpha
Helix 196	AV7	O	186	191	Right-handed 310
Helix 197	AV8	O	206	237	Right-handed alpha
Helix 198	AV9	T	98	103	Right-handed 310
Helix 199	AW1	T	118	145	Right-handed alpha
Helix 200	AW2	T	169	176	Right-handed 310
Helix 201	AW3	T	178	195	Right-handed alpha
Helix 202	AW4	T	202	207	Right-handed 310
Helix 203	AW5	T	220	251	Right-handed alpha
Helix 204	AW6	Q	65	96	Right-handed alpha
Helix 205	AW7	Q	119	124	Right-handed alpha
Helix 206	AW8	Q	125	143	Right-handed alpha
Helix 207	AW9	Q	149	153	Right-handed 310
Helix 208	AX1	Q	170	200	Right-handed alpha
Helix 209	AX2	C	118	149	Right-handed alpha
Helix 210	AX3	C	170	174	Right-handed 310
Helix 211	AX4	C	178	195	Right-handed alpha
Helix 212	AX5	C	202	207	Right-handed 310
Helix 213	AX6	C	218	250	Right-handed alpha
Helix 214	AX7	P	50	81	Right-handed alpha
Helix 215	AX8	P	104	109	Right-handed alpha
Helix 216	AX9	P	110	125	Right-handed alpha
Helix 217	AY1	P	134	139	Right-handed 310
Helix 218	AY2	P	153	183	Right-handed alpha
Helix 219	AY3	E	116	141	Right-handed alpha
Helix 220	AY4	E	157	162	Right-handed alpha
Helix 221	AY5	E	164	183	Right-handed alpha
Helix 222	AY6	E	197	202	Right-handed 310
Helix 223	AY7	E	205	237	Right-handed alpha

There are 13 sheets in PDB entry 8JW0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	88	91	first strand
Strand 2	a	103	105	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	72	74	first strand
Strand 2	b	92	93	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	358	359	first strand
Strand 2	f	96	97	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	390	392	first strand
Strand 2	f	7	9	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	64	67	first strand
Strand 2	c	3	7	anti-parallel
Strand 3	d	168	169	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	26	29	first strand
Strand 2	c	37	40	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	108	113	first strand
Strand 2	d	81	87	anti-parallel
Strand 3	d	135	139	anti-parallel
Strand 4	d	145	148	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	93	95	first strand
Strand 2	d	101	103	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	54	57	first strand
Strand 2	e	40	43	anti-parallel
Strand 3	e	24	30	anti-parallel
Strand 4	e	10	13	anti-parallel
Strand 5	e	62	64	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	261	262	first strand
Strand 2	L	109	110	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	304	309	first strand
Strand 2	l	312	319	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	139	141	first strand
Strand 2	O	146	147	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	155	157	first strand
Strand 2	T	162	163	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JW0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JW0