Analysis of interatomic Contacts of Structural Units in PDB entry:
8JW0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JW0 entry

There are 29 chains in PDB entry 8JW0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
a
ASP 4ALA 648
b
TYR 1SER 617
c
ALA 1SER 86
d
ALA 1VAL 257
e
ALA 1LEU 74
f
ILE 1ALA 185
h
TYR 1LYS 132
i
ALA 57SER 182
j
ARG 1TRP 70
l
VAL 206PHE 458
m
GLU 1PRO 89
A
GLU 15TYR 194
G
ALA 1TYR 215
I
LYS 1GLY 194
K
GLY 13PHE 184
F
PHE 28ALA 203
J
ARG 83GLY 247
M
PHE 115ILE 282
L
ALA 96PHE 280
D
PHE 34TYR 193
B
VAL 91TYR 262
H
PHE 64TRP 223
N
PHE 30TRP 189
O
GLU 80TYR 240
T
GLU 96TRP 254
Q
PHE 42TRP 203
C
PHE 95TRP 254
P
PHE 27TRP 186
E
VAL 96PHE 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are223 helices in PDB entry 8JW0. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
a
4 10Right-handed alpha
Helix 2
AA2
a
10 19Right-handed alpha
Helix 3
AA3
a
20 23Right-handed 310
Helix 4
AA4
a
24 34Right-handed alpha
Helix 5
AA5
a
43 73Right-handed alpha
Helix 6
AA6
a
75 82Right-handed alpha
Helix 7
AA7
a
97 101Right-handed 310
Helix 8
AA8
a
109 117Right-handed alpha
Helix 9
AA9
a
121 149Right-handed alpha
Helix 10
AB1
a
160 170Right-handed alpha
Helix 11
AB2
a
170 197Right-handed alpha
Helix 12
AB3
a
203 208Right-handed 310
Helix 13
AB4
a
212 217Right-handed alpha
Helix 14
AB5
a
233 256Right-handed alpha
Helix 15
AB6
a
268 298Right-handed alpha
Helix 16
AB7
a
307 339Right-handed alpha
Helix 17
AB8
a
343 345Right-handed 310
Helix 18
AB9
a
346 352Right-handed alpha
Helix 19
AC1
a
352 384Right-handed alpha
Helix 20
AC2
a
386 390Right-handed 310
Helix 21
AC3
a
400 404Right-handed 310
Helix 22
AC4
a
425 452Right-handed alpha
Helix 23
AC5
a
461 466Right-handed 310
Helix 24
AC6
a
483 518Right-handed alpha
Helix 25
AC7
a
530 536Right-handed alpha
Helix 26
AC8
a
538 546Right-handed alpha
Helix 27
AC9
a
546 556Right-handed alpha
Helix 28
AD1
a
562 585Right-handed alpha
Helix 29
AD2
a
586 604Right-handed alpha
Helix 30
AD3
a
616 647Right-handed alpha
Helix 31
AD4
b
6 13Right-handed alpha
Helix 32
AD5
b
18 22Right-handed 310
Helix 33
AD6
b
27 56Right-handed alpha
Helix 34
AD7
b
58 65Right-handed alpha
Helix 35
AD8
b
82 89Right-handed alpha
Helix 36
AD9
b
97 105Right-handed alpha
Helix 37
AE1
b
109 133Right-handed alpha
Helix 38
AE2
b
135 140Right-handed alpha
Helix 39
AE3
b
143 161Right-handed alpha
Helix 40
AE4
b
162 166Right-handed 310
Helix 41
AE5
b
170 175Right-handed alpha
Helix 42
AE6
b
178 184Right-handed alpha
Helix 43
AE7
b
200 228Right-handed alpha
Helix 44
AE8
b
236 262Right-handed alpha
Helix 45
AE9
b
271 304Right-handed alpha
Helix 46
AF1
b
310 318Right-handed alpha
Helix 47
AF2
b
318 350Right-handed alpha
Helix 48
AF3
b
352 356Right-handed 310
Helix 49
AF4
b
361 372Right-handed alpha
Helix 50
AF5
b
398 426Right-handed alpha
Helix 51
AF6
b
434 438Right-handed 310
Helix 52
AF7
b
456 488Right-handed alpha
Helix 53
AF8
b
492 498Right-handed alpha
Helix 54
AF9
b
500 507Right-handed alpha
Helix 55
AG1
b
508 513Right-handed alpha
Helix 56
AG2
b
513 518Right-handed alpha
Helix 57
AG3
b
528 551Right-handed alpha
Helix 58
AG4
b
552 570Right-handed alpha
Helix 59
AG5
b
588 617Right-handed alpha
Helix 60
AG6
c
14 20Right-handed alpha
Helix 61
AG7
c
43 47Right-handed 310
Helix 62
AG8
c
51 56Right-handed alpha
Helix 63
AG9
c
69 73Right-handed 310
Helix 64
AH1
d
9 15Right-handed alpha
Helix 65
AH2
d
20 25Right-handed alpha
Helix 66
AH3
d
53 57Right-handed 310
Helix 67
AH4
d
115 129Right-handed alpha
Helix 68
AH5
d
172 176Right-handed 310
Helix 69
AH6
d
190 194Right-handed 310
Helix 70
AH7
d
195 210Right-handed alpha
Helix 71
AH8
d
234 257Right-handed alpha
Helix 72
AH9
e
58 60Right-handed 310
Helix 73
AI1
f
20 24Right-handed 310
Helix 74
AI2
f
25 29Right-handed 310
Helix 75
AI3
f
34 37Right-handed 310
Helix 76
AI4
f
38 59Right-handed alpha
Helix 77
AI5
f
63 84Right-handed alpha
Helix 78
AI6
f
108 133Right-handed alpha
Helix 79
AI7
f
135 141Right-handed alpha
Helix 80
AI8
f
143 154Right-handed alpha
Helix 81
AI9
f
156 167Right-handed alpha
Helix 82
AJ1
f
173 177Right-handed 310
Helix 83
AJ2
h
4 24Right-handed alpha
Helix 84
AJ3
h
30 34Right-handed 310
Helix 85
AJ4
h
54 62Right-handed 310
Helix 86
AJ5
h
65 89Right-handed alpha
Helix 87
AJ6
h
92 99Right-handed alpha
Helix 88
AJ7
h
104 112Right-handed alpha
Helix 89
AJ8
h
113 130Right-handed alpha
Helix 90
AJ9
i
61 90Right-handed alpha
Helix 91
AK1
i
102 119Right-handed alpha
Helix 92
AK2
i
129 134Right-handed 310
Helix 93
AK3
i
136 151Right-handed alpha
Helix 94
AK4
i
159 169Right-handed alpha
Helix 95
AK5
j
31 40Right-handed alpha
Helix 96
AK6
j
41 64Right-handed alpha
Helix 97
AK7
l
207 211Right-handed 310
Helix 98
AK8
l
219 230Right-handed alpha
Helix 99
AK9
l
231 235Right-handed 310
Helix 100
AL1
l
242 252Right-handed alpha
Helix 101
AL2
l
263 274Right-handed alpha
Helix 102
AL3
l
282 300Right-handed alpha
Helix 103
AL4
l
336 341Right-handed alpha
Helix 104
AL5
l
341 349Right-handed alpha
Helix 105
AL6
l
359 376Right-handed alpha
Helix 106
AL7
l
376 381Right-handed alpha
Helix 107
AL8
l
390 417Right-handed alpha
Helix 108
AL9
l
430 457Right-handed alpha
Helix 109
AM1
m
6 13Right-handed alpha
Helix 110
AM2
m
26 52Right-handed alpha
Helix 111
AM3
m
65 75Right-handed alpha
Helix 112
AM4
A
15 20Right-handed 310
Helix 113
AM5
A
38 43Right-handed alpha
Helix 114
AM6
A
46 70Right-handed alpha
Helix 115
AM7
A
71 73Right-handed 310
Helix 116
AM8
A
86 97Right-handed alpha
Helix 117
AM9
A
98 120Right-handed alpha
Helix 118
AN1
A
126 131Right-handed alpha
Helix 119
AN2
A
147 151Right-handed 310
Helix 120
AN3
A
154 186Right-handed alpha
Helix 121
AN4
G
33 39Right-handed alpha
Helix 122
AN5
G
44 48Right-handed 310
Helix 123
AN6
G
53 58Right-handed 310
Helix 124
AN7
G
59 68Right-handed alpha
Helix 125
AN8
G
75 101Right-handed alpha
Helix 126
AN9
G
113 124Right-handed alpha
Helix 127
AO1
G
124 144Right-handed alpha
Helix 128
AO2
G
148 153Right-handed 310
Helix 129
AO3
G
176 204Right-handed alpha
Helix 130
AO4
I
21 25Right-handed 310
Helix 131
AO5
I
30 35Right-handed alpha
Helix 132
AO6
I
36 61Right-handed alpha
Helix 133
AO7
I
75 77Right-handed 310
Helix 134
AO8
I
78 83Right-handed alpha
Helix 135
AO9
I
84 102Right-handed alpha
Helix 136
AP1
I
111 115Right-handed 310
Helix 137
AP2
I
127 132Right-handed alpha
Helix 138
AP3
I
135 167Right-handed alpha
Helix 139
AP4
K
27 31Right-handed 310
Helix 140
AP5
K
45 50Right-handed alpha
Helix 141
AP6
K
51 78Right-handed alpha
Helix 142
AP7
K
84 88Right-handed 310
Helix 143
AP8
K
90 102Right-handed alpha
Helix 144
AP9
K
102 126Right-handed alpha
Helix 145
AQ1
K
146 178Right-handed alpha
Helix 146
AQ2
F
51 78Right-handed alpha
Helix 147
AQ3
F
79 81Right-handed 310
Helix 148
AQ4
F
110 127Right-handed alpha
Helix 149
AQ5
F
166 195Right-handed alpha
Helix 150
AQ6
F
198 203Right-handed alpha
Helix 151
AQ7
J
111 140Right-handed alpha
Helix 152
AQ8
J
158 166Right-handed alpha
Helix 153
AQ9
J
167 185Right-handed alpha
Helix 154
AR1
J
201 205Right-handed 310
Helix 155
AR2
J
217 243Right-handed alpha
Helix 156
AR3
M
137 142Right-handed alpha
Helix 157
AR4
M
145 173Right-handed alpha
Helix 158
AR5
M
189 196Right-handed alpha
Helix 159
AR6
M
199 220Right-handed alpha
Helix 160
AR7
M
242 274Right-handed alpha
Helix 161
AR8
L
99 104Right-handed alpha
Helix 162
AR9
L
105 107Right-handed 310
Helix 163
AS1
L
117 121Right-handed 310
Helix 164
AS2
L
137 143Right-handed 310
Helix 165
AS3
L
144 168Right-handed alpha
Helix 166
AS4
L
169 171Right-handed 310
Helix 167
AS5
L
176 180Right-handed 310
Helix 168
AS6
L
187 193Right-handed 310
Helix 169
AS7
L
194 199Right-handed alpha
Helix 170
AS8
L
199 215Right-handed alpha
Helix 171
AS9
L
215 220Right-handed alpha
Helix 172
AT1
L
241 271Right-handed alpha
Helix 173
AT2
D
57 88Right-handed alpha
Helix 174
AT3
D
102 106Right-handed 310
Helix 175
AT4
D
109 115Right-handed 310
Helix 176
AT5
D
117 133Right-handed alpha
Helix 177
AT6
D
141 146Right-handed 310
Helix 178
AT7
D
157 190Right-handed alpha
Helix 179
AT8
B
103 107Right-handed 310
Helix 180
AT9
B
126 154Right-handed alpha
Helix 181
AU1
B
167 169Right-handed 310
Helix 182
AU2
B
170 175Right-handed alpha
Helix 183
AU3
B
178 204Right-handed alpha
Helix 184
AU4
B
223 255Right-handed alpha
Helix 185
AU5
H
88 118Right-handed alpha
Helix 186
AU6
H
147 164Right-handed alpha
Helix 187
AU7
H
171 176Right-handed 310
Helix 188
AU8
H
190 220Right-handed alpha
Helix 189
AU9
N
53 78Right-handed alpha
Helix 190
AV1
N
107 112Right-handed alpha
Helix 191
AV2
N
113 130Right-handed alpha
Helix 192
AV3
N
155 185Right-handed alpha
Helix 193
AV4
O
102 133Right-handed alpha
Helix 194
AV5
O
154 158Right-handed 310
Helix 195
AV6
O
162 179Right-handed alpha
Helix 196
AV7
O
186 191Right-handed 310
Helix 197
AV8
O
206 237Right-handed alpha
Helix 198
AV9
T
98 103Right-handed 310
Helix 199
AW1
T
118 145Right-handed alpha
Helix 200
AW2
T
169 176Right-handed 310
Helix 201
AW3
T
178 195Right-handed alpha
Helix 202
AW4
T
202 207Right-handed 310
Helix 203
AW5
T
220 251Right-handed alpha
Helix 204
AW6
Q
65 96Right-handed alpha
Helix 205
AW7
Q
119 124Right-handed alpha
Helix 206
AW8
Q
125 143Right-handed alpha
Helix 207
AW9
Q
149 153Right-handed 310
Helix 208
AX1
Q
170 200Right-handed alpha
Helix 209
AX2
C
118 149Right-handed alpha
Helix 210
AX3
C
170 174Right-handed 310
Helix 211
AX4
C
178 195Right-handed alpha
Helix 212
AX5
C
202 207Right-handed 310
Helix 213
AX6
C
218 250Right-handed alpha
Helix 214
AX7
P
50 81Right-handed alpha
Helix 215
AX8
P
104 109Right-handed alpha
Helix 216
AX9
P
110 125Right-handed alpha
Helix 217
AY1
P
134 139Right-handed 310
Helix 218
AY2
P
153 183Right-handed alpha
Helix 219
AY3
E
116 141Right-handed alpha
Helix 220
AY4
E
157 162Right-handed alpha
Helix 221
AY5
E
164 183Right-handed alpha
Helix 222
AY6
E
197 202Right-handed 310
Helix 223
AY7
E
205 237Right-handed alpha
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There are 13 sheets in PDB entry 8JW0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
a
88 91first strand
Strand 2
a
103 105anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
b
72 74first strand
Strand 2
b
92 93anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
b
358 359first strand
Strand 2
f
96 97parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
b
390 392first strand
Strand 2
f
7 9anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
c
64 67first strand
Strand 2
c
3 7anti-parallel
Strand 3
d
168 169parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
c
26 29first strand
Strand 2
c
37 40anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
d
108 113first strand
Strand 2
d
81 87anti-parallel
Strand 3
d
135 139anti-parallel
Strand 4
d
145 148anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
d
93 95first strand
Strand 2
d
101 103anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
e
54 57first strand
Strand 2
e
40 43anti-parallel
Strand 3
e
24 30anti-parallel
Strand 4
e
10 13anti-parallel
Strand 5
e
62 64anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
l
261 262first strand
Strand 2
L
109 110anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
l
304 309first strand
Strand 2
l
312 319anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
139 141first strand
Strand 2
O
146 147anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
155 157first strand
Strand 2
T
162 163anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il