Analysis of interatomic Contacts of Structural Units in PDB entry:
8JWE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JWE entry

There are 7 chains in PDB entry 8JWE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 439	THR 731
B	PHE 439	THR 731
C	PHE 439	THR 731
D	PHE 439	THR 731
E	PHE 439	THR 731
F	PHE 439	THR 731
G	PHE 439	THR 731

There are 70 helices in PDB entry 8JWE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	446	462	Right-handed alpha
Helix 2	AA2	A	474	479	Right-handed alpha
Helix 3	AA3	A	479	494	Right-handed alpha
Helix 4	AA4	A	508	522	Right-handed alpha
Helix 5	AA5	A	525	534	Right-handed alpha
Helix 6	AA6	A	543	551	Right-handed alpha
Helix 7	AA7	A	555	571	Right-handed alpha
Helix 8	AA8	A	612	616	Right-handed alpha
Helix 9	AA9	A	642	659	Right-handed alpha
Helix 10	AB1	A	695	717	Right-handed alpha
Helix 11	AB2	B	446	462	Right-handed alpha
Helix 12	AB3	B	474	479	Right-handed alpha
Helix 13	AB4	B	479	494	Right-handed alpha
Helix 14	AB5	B	508	522	Right-handed alpha
Helix 15	AB6	B	525	534	Right-handed alpha
Helix 16	AB7	B	543	551	Right-handed alpha
Helix 17	AB8	B	555	571	Right-handed alpha
Helix 18	AB9	B	612	616	Right-handed alpha
Helix 19	AC1	B	642	659	Right-handed alpha
Helix 20	AC2	B	695	717	Right-handed alpha
Helix 21	AC3	C	446	462	Right-handed alpha
Helix 22	AC4	C	474	479	Right-handed alpha
Helix 23	AC5	C	479	494	Right-handed alpha
Helix 24	AC6	C	508	522	Right-handed alpha
Helix 25	AC7	C	525	534	Right-handed alpha
Helix 26	AC8	C	543	551	Right-handed alpha
Helix 27	AC9	C	555	571	Right-handed alpha
Helix 28	AD1	C	612	616	Right-handed alpha
Helix 29	AD2	C	642	659	Right-handed alpha
Helix 30	AD3	C	695	717	Right-handed alpha
Helix 31	AD4	D	446	462	Right-handed alpha
Helix 32	AD5	D	474	479	Right-handed alpha
Helix 33	AD6	D	479	494	Right-handed alpha
Helix 34	AD7	D	508	522	Right-handed alpha
Helix 35	AD8	D	525	534	Right-handed alpha
Helix 36	AD9	D	543	551	Right-handed alpha
Helix 37	AE1	D	555	571	Right-handed alpha
Helix 38	AE2	D	612	616	Right-handed alpha
Helix 39	AE3	D	642	659	Right-handed alpha
Helix 40	AE4	D	695	717	Right-handed alpha
Helix 41	AE5	E	446	462	Right-handed alpha
Helix 42	AE6	E	474	479	Right-handed alpha
Helix 43	AE7	E	479	494	Right-handed alpha
Helix 44	AE8	E	508	522	Right-handed alpha
Helix 45	AE9	E	525	534	Right-handed alpha
Helix 46	AF1	E	543	551	Right-handed alpha
Helix 47	AF2	E	555	571	Right-handed alpha
Helix 48	AF3	E	612	616	Right-handed alpha
Helix 49	AF4	E	642	659	Right-handed alpha
Helix 50	AF5	E	695	717	Right-handed alpha
Helix 51	AF6	F	446	462	Right-handed alpha
Helix 52	AF7	F	474	479	Right-handed alpha
Helix 53	AF8	F	479	494	Right-handed alpha
Helix 54	AF9	F	508	522	Right-handed alpha
Helix 55	AG1	F	525	534	Right-handed alpha
Helix 56	AG2	F	543	551	Right-handed alpha
Helix 57	AG3	F	555	571	Right-handed alpha
Helix 58	AG4	F	612	616	Right-handed alpha
Helix 59	AG5	F	642	659	Right-handed alpha
Helix 60	AG6	F	695	717	Right-handed alpha
Helix 61	AG7	G	446	462	Right-handed alpha
Helix 62	AG8	G	474	479	Right-handed alpha
Helix 63	AG9	G	479	494	Right-handed alpha
Helix 64	AH1	G	508	522	Right-handed alpha
Helix 65	AH2	G	525	534	Right-handed alpha
Helix 66	AH3	G	543	551	Right-handed alpha
Helix 67	AH4	G	555	571	Right-handed alpha
Helix 68	AH5	G	612	616	Right-handed alpha
Helix 69	AH6	G	642	659	Right-handed alpha
Helix 70	AH7	G	695	717	Right-handed alpha

There are 9 sheets in PDB entry 8JWE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 36 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	580	582	first strand
Strand 2	A	587	593	anti-parallel
Strand 3	A	597	601	anti-parallel
Strand 4	A	607	611	anti-parallel
Strand 5	F	620	622	anti-parallel
Strand 6	F	580	582	anti-parallel
Strand 7	F	587	593	anti-parallel
Strand 8	F	597	601	anti-parallel
Strand 9	F	607	611	anti-parallel
Strand 10	E	620	622	anti-parallel
Strand 11	E	580	582	anti-parallel
Strand 12	E	587	593	anti-parallel
Strand 13	E	597	601	anti-parallel
Strand 14	E	607	611	anti-parallel
Strand 15	D	620	622	anti-parallel
Strand 16	D	580	582	anti-parallel
Strand 17	D	587	593	anti-parallel
Strand 18	D	597	601	anti-parallel
Strand 19	D	607	611	anti-parallel
Strand 20	C	620	622	anti-parallel
Strand 21	C	580	582	anti-parallel
Strand 22	C	587	593	anti-parallel
Strand 23	C	597	601	anti-parallel
Strand 24	C	607	611	anti-parallel
Strand 25	G	620	622	anti-parallel
Strand 26	G	580	582	anti-parallel
Strand 27	G	587	593	anti-parallel
Strand 28	G	597	601	anti-parallel
Strand 29	G	607	611	anti-parallel
Strand 30	B	620	622	anti-parallel
Strand 31	B	580	582	anti-parallel
Strand 32	B	587	593	anti-parallel
Strand 33	B	597	601	anti-parallel
Strand 34	B	607	611	anti-parallel
Strand 35	A	620	622	anti-parallel
Strand 36	A	580	582	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	630	638	first strand
Strand 2	A	680	688	anti-parallel
Strand 3	A	669	676	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	726	731	first strand
Strand 2	B	726	731	parallel
Strand 3	G	726	731	parallel
Strand 4	C	726	731	parallel
Strand 5	D	726	731	parallel
Strand 6	E	726	731	parallel
Strand 7	F	726	731	parallel
Strand 8	A	726	731	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	630	638	first strand
Strand 2	B	680	688	anti-parallel
Strand 3	B	669	676	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	630	638	first strand
Strand 2	C	680	688	anti-parallel
Strand 3	C	669	676	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	630	638	first strand
Strand 2	D	680	688	anti-parallel
Strand 3	D	669	676	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	630	638	first strand
Strand 2	E	680	688	anti-parallel
Strand 3	E	669	676	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	630	638	first strand
Strand 2	F	680	688	anti-parallel
Strand 3	F	669	676	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	630	638	first strand
Strand 2	G	680	688	anti-parallel
Strand 3	G	669	676	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JWE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JWE