Analysis of interatomic Contacts of Structural Units in PDB entry:
8JWF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JWF entry

There is 1 chain in PDB entry 8JWF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 14ALA 1418
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 8JWF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 24Right-handed alpha
Helix 2
AA2
A
27 39Right-handed alpha
Helix 3
AA3
A
50 66Right-handed alpha
Helix 4
AA4
A
67 69Right-handed 310
Helix 5
AA5
A
70 87Right-handed alpha
Helix 6
AA6
A
91 136Right-handed alpha
Helix 7
AA7
A
140 146Right-handed alpha
Helix 8
AA8
A
148 163Right-handed alpha
Helix 9
AA9
A
167 170Right-handed 310
Helix 10
AB1
A
171 191Right-handed alpha
Helix 11
AB2
A
192 200Right-handed alpha
Helix 12
AB3
A
201 226Right-handed alpha
Helix 13
AB4
A
227 240Right-handed alpha
Helix 14
AB5
A
240 248Right-handed alpha
Helix 15
AB6
A
249 305Right-handed alpha
Helix 16
AB7
A
316 358Right-handed alpha
Helix 17
AB8
A
418 427Right-handed alpha
Helix 18
AB9
A
449 456Right-handed alpha
Helix 19
AC1
A
470 489Right-handed alpha
Helix 20
AC2
A
519 524Right-handed alpha
Helix 21
AC3
A
525 527Right-handed 310
Helix 22
AC4
A
529 537Right-handed alpha
Helix 23
AC5
A
541 548Right-handed alpha
Helix 24
AC6
A
564 579Right-handed alpha
Helix 25
AC7
A
588 593Right-handed 310
Helix 26
AC8
A
594 607Right-handed alpha
Helix 27
AC9
A
623 627Right-handed 310
Helix 28
AD1
A
676 681Right-handed alpha
Helix 29
AD2
A
685 694Right-handed alpha
Helix 30
AD3
A
772 784Right-handed alpha
Helix 31
AD4
A
786 801Right-handed alpha
Helix 32
AD5
A
802 817Right-handed alpha
Helix 33
AD6
A
822 872Right-handed alpha
Helix 34
AD7
A
875 881Right-handed alpha
Helix 35
AD8
A
885 903Right-handed alpha
Helix 36
AD9
A
903 929Right-handed alpha
Helix 37
AE1
A
929 947Right-handed alpha
Helix 38
AE2
A
948 962Right-handed alpha
Helix 39
AE3
A
982 990Right-handed alpha
Helix 40
AE4
A
992 999Right-handed alpha
Helix 41
AE5
A
1001 1036Right-handed alpha
Helix 42
AE6
A
1037 1056Right-handed alpha
Helix 43
AE7
A
1059 1082Right-handed alpha
Helix 44
AE8
A
1087 1098Right-handed alpha
Helix 45
AE9
A
1099 1102Right-handed 310
Helix 46
AF1
A
1118 1122Right-handed 310
Helix 47
AF2
A
1166 1174Right-handed 310
Helix 48
AF3
A
1238 1242Right-handed 310
Helix 49
AF4
A
1243 1248Right-handed alpha
Helix 50
AF5
A
1264 1269Right-handed alpha
Helix 51
AF6
A
1277 1289Right-handed alpha
Helix 52
AF7
A
1306 1310Right-handed 310
Helix 53
AF8
A
1314 1327Right-handed alpha
Helix 54
AF9
A
1343 1360Right-handed alpha
Helix 55
AG1
A
1371 1376Right-handed alpha
Helix 56
AG2
A
1410 1417Right-handed alpha
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There are 7 sheets in PDB entry 8JWF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 379first strand
Strand 2
A
402 403anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 439first strand
Strand 2
A
443 444anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 460first strand
Strand 2
A
583 586parallel
Strand 3
A
616 617parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
633 636first strand
Strand 2
A
669 673anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1150 1151first strand
Strand 2
A
1126 1131anti-parallel
Strand 3
A
1230 1234anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1366 1368first strand
Strand 2
A
1157 1161parallel
Strand 3
A
1381 1385parallel
Strand 4
A
1393 1397anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1251 1254first strand
Strand 2
A
1332 1335parallel
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