Analysis of interatomic Contacts of Structural Units in PDB entry:
8JWI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JWI entry

There is 1 chain in PDB entry 8JWI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 39ALA 1418
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 8JWI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 69Right-handed alpha
Helix 2
AA2
A
70 83Right-handed alpha
Helix 3
AA3
A
92 132Right-handed alpha
Helix 4
AA4
A
139 146Right-handed alpha
Helix 5
AA5
A
147 164Right-handed alpha
Helix 6
AA6
A
165 167Right-handed 310
Helix 7
AA7
A
168 185Right-handed alpha
Helix 8
AA8
A
185 191Right-handed alpha
Helix 9
AA9
A
201 240Right-handed alpha
Helix 10
AB1
A
240 248Right-handed alpha
Helix 11
AB2
A
251 272Right-handed alpha
Helix 12
AB3
A
273 308Right-handed alpha
Helix 13
AB4
A
317 337Right-handed alpha
Helix 14
AB5
A
339 358Right-handed alpha
Helix 15
AB6
A
418 427Right-handed alpha
Helix 16
AB7
A
444 448Right-handed 310
Helix 17
AB8
A
449 454Right-handed alpha
Helix 18
AB9
A
470 477Right-handed alpha
Helix 19
AC1
A
479 489Right-handed alpha
Helix 20
AC2
A
519 524Right-handed alpha
Helix 21
AC3
A
525 527Right-handed 310
Helix 22
AC4
A
530 538Right-handed alpha
Helix 23
AC5
A
541 546Right-handed alpha
Helix 24
AC6
A
557 561Right-handed 310
Helix 25
AC7
A
564 578Right-handed alpha
Helix 26
AC8
A
594 606Right-handed alpha
Helix 27
AC9
A
676 681Right-handed alpha
Helix 28
AD1
A
685 695Right-handed alpha
Helix 29
AD2
A
775 783Right-handed alpha
Helix 30
AD3
A
785 801Right-handed alpha
Helix 31
AD4
A
805 815Right-handed alpha
Helix 32
AD5
A
822 872Right-handed alpha
Helix 33
AD6
A
876 881Right-handed alpha
Helix 34
AD7
A
885 927Right-handed alpha
Helix 35
AD8
A
929 949Right-handed alpha
Helix 36
AD9
A
981 992Right-handed alpha
Helix 37
AE1
A
992 999Right-handed alpha
Helix 38
AE2
A
1002 1017Right-handed alpha
Helix 39
AE3
A
1021 1037Right-handed alpha
Helix 40
AE4
A
1038 1056Right-handed alpha
Helix 41
AE5
A
1059 1068Right-handed alpha
Helix 42
AE6
A
1070 1076Right-handed alpha
Helix 43
AE7
A
1077 1082Right-handed 310
Helix 44
AE8
A
1084 1103Right-handed alpha
Helix 45
AE9
A
1166 1175Right-handed alpha
Helix 46
AF1
A
1240 1242Right-handed 310
Helix 47
AF2
A
1246 1250Right-handed alpha
Helix 48
AF3
A
1264 1270Right-handed alpha
Helix 49
AF4
A
1277 1288Right-handed alpha
Helix 50
AF5
A
1293 1297Right-handed 310
Helix 51
AF6
A
1306 1310Right-handed 310
Helix 52
AF7
A
1313 1328Right-handed alpha
Helix 53
AF8
A
1343 1360Right-handed alpha
Helix 54
AF9
A
1371 1375Right-handed 310
Helix 55
AG1
A
1410 1417Right-handed alpha
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There are 4 sheets in PDB entry 8JWI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 383first strand
Strand 2
A
399 403anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 460first strand
Strand 2
A
583 587parallel
Strand 3
A
615 619parallel
Strand 4
A
407 412parallel
Strand 5
A
632 636parallel
Strand 6
A
669 674anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1150 1151first strand
Strand 2
A
1126 1131anti-parallel
Strand 3
A
1230 1234anti-parallel
Strand 4
A
1237 1238anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1251 1254first strand
Strand 2
A
1332 1335parallel
Strand 3
A
1364 1368parallel
Strand 4
A
1156 1160parallel
Strand 5
A
1380 1385parallel
Strand 6
A
1393 1397anti-parallel
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