Analysis of interatomic Contacts of Structural Units in PDB entry:
8JWJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JWJ entry

There are 4 chains in PDB entry 8JWJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 30LEU 301
B
 GLY -3MET 147
C
 SER 30LEU 301
D
 GLY -3MET 147
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8JWJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 47Right-handed alpha
Helix 2
AA2
A
59 65Right-handed alpha
Helix 3
AA3
A
82 94Right-handed alpha
Helix 4
AA4
A
120 127Right-handed alpha
Helix 5
AA5
A
187 202Right-handed alpha
Helix 6
AA6
A
211 220Right-handed alpha
Helix 7
AA7
A
265 268Right-handed 310
Helix 8
AA8
A
284 286Right-handed 310
Helix 9
AA9
B
-2 16Right-handed alpha
Helix 10
AB1
B
86 90Right-handed 310
Helix 11
AB2
B
98 112Right-handed alpha
Helix 12
AB3
B
120 130Right-handed alpha
Helix 13
AB4
B
130 146Right-handed alpha
Helix 14
AB5
C
42 47Right-handed alpha
Helix 15
AB6
C
59 65Right-handed alpha
Helix 16
AB7
C
82 96Right-handed alpha
Helix 17
AB8
C
120 126Right-handed alpha
Helix 18
AB9
C
170 172Right-handed 310
Helix 19
AC1
C
187 198Right-handed alpha
Helix 20
AC2
C
211 220Right-handed alpha
Helix 21
AC3
C
229 234Right-handed alpha
Helix 22
AC4
C
238 243Right-handed alpha
Helix 23
AC5
C
265 269Right-handed 310
Helix 24
AC6
C
297 301Right-handed 310
Helix 25
AC7
D
-2 16Right-handed alpha
Helix 26
AC8
D
86 90Right-handed 310
Helix 27
AC9
D
98 112Right-handed alpha
Helix 28
AD1
D
120 130Right-handed alpha
Helix 29
AD2
D
130 146Right-handed alpha
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There are 13 sheets in PDB entry 8JWJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
55 58anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 109first strand
Strand 2
A
118 119anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
139 140anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 160first strand
Strand 2
A
165 166anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 176first strand
Strand 2
A
184 186anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 272first strand
Strand 2
A
280 282anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 26first strand
Strand 2
B
29 38anti-parallel
Strand 3
B
49 55anti-parallel
Strand 4
B
66 69anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
49 50first strand
Strand 2
C
57 58anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
108 109first strand
Strand 2
C
118 119anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
130 131first strand
Strand 2
C
139 140anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
174 176first strand
Strand 2
C
184 186anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
271 272first strand
Strand 2
C
280 281anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
21 26first strand
Strand 2
D
29 38anti-parallel
Strand 3
D
49 55anti-parallel
Strand 4
D
66 69anti-parallel
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