Analysis of interatomic Contacts of Structural Units in PDB entry:
8JWU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JWU entry

There are 3 chains in PDB entry 8JWU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 18	MET 1147
B	PRO 18	MET 1147
C	PRO 18	MET 458

There are 44 helices in PDB entry 8JWU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	34	Right-handed alpha
Helix 2	AA2	A	46	52	Right-handed alpha
Helix 3	AA3	A	69	82	Right-handed alpha
Helix 4	AA4	A	107	115	Right-handed alpha
Helix 5	AA5	A	166	169	Right-handed 310
Helix 6	AA6	A	174	184	Right-handed alpha
Helix 7	AA7	A	185	189	Right-handed 310
Helix 8	AA8	A	198	207	Right-handed alpha
Helix 9	AA9	A	216	221	Right-handed alpha
Helix 10	AB1	A	225	230	Right-handed alpha
Helix 11	AB2	A	270	274	Right-handed alpha
Helix 12	AB3	A	1000	1016	Right-handed alpha
Helix 13	AB4	A	1086	1090	Right-handed 310
Helix 14	AB5	A	1098	1112	Right-handed alpha
Helix 15	AB6	A	1120	1130	Right-handed alpha
Helix 16	AB7	A	1130	1145	Right-handed alpha
Helix 17	AB8	B	29	34	Right-handed alpha
Helix 18	AB9	B	46	52	Right-handed alpha
Helix 19	AC1	B	69	81	Right-handed alpha
Helix 20	AC2	B	107	115	Right-handed alpha
Helix 21	AC3	B	166	169	Right-handed 310
Helix 22	AC4	B	174	185	Right-handed alpha
Helix 23	AC5	B	186	189	Right-handed 310
Helix 24	AC6	B	198	207	Right-handed alpha
Helix 25	AC7	B	216	221	Right-handed alpha
Helix 26	AC8	B	1000	1016	Right-handed alpha
Helix 27	AC9	B	1086	1090	Right-handed 310
Helix 28	AD1	B	1098	1112	Right-handed alpha
Helix 29	AD2	B	1120	1130	Right-handed alpha
Helix 30	AD3	B	1132	1146	Right-handed alpha
Helix 31	AD4	C	29	34	Right-handed alpha
Helix 32	AD5	C	46	52	Right-handed alpha
Helix 33	AD6	C	69	82	Right-handed alpha
Helix 34	AD7	C	107	115	Right-handed alpha
Helix 35	AD8	C	174	184	Right-handed alpha
Helix 36	AD9	C	185	189	Right-handed 310
Helix 37	AE1	C	198	207	Right-handed alpha
Helix 38	AE2	C	216	221	Right-handed alpha
Helix 39	AE3	C	225	230	Right-handed alpha
Helix 40	AE4	C	311	327	Right-handed alpha
Helix 41	AE5	C	397	401	Right-handed 310
Helix 42	AE6	C	409	423	Right-handed alpha
Helix 43	AE7	C	431	441	Right-handed alpha
Helix 44	AE8	C	441	456	Right-handed alpha

There are 19 sheets in PDB entry 8JWU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	37	first strand
Strand 2	A	44	45	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	96	first strand
Strand 2	A	105	106	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	118	first strand
Strand 2	A	126	127	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	152	153	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	163	first strand
Strand 2	A	171	173	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1022	1026	first strand
Strand 2	A	1029	1038	anti-parallel
Strand 3	A	1049	1055	anti-parallel
Strand 4	A	1066	1069	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	39	first strand
Strand 2	B	42	45	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	118	first strand
Strand 2	B	126	127	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	152	153	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	163	first strand
Strand 2	B	171	173	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	259	first strand
Strand 2	B	267	269	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1022	1026	first strand
Strand 2	B	1029	1038	anti-parallel
Strand 3	B	1049	1055	anti-parallel
Strand 4	B	1066	1069	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	37	first strand
Strand 2	C	44	45	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	96	first strand
Strand 2	C	105	106	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	118	first strand
Strand 2	C	126	127	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	147	first strand
Strand 2	C	152	153	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	163	first strand
Strand 2	C	171	173	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	257	259	first strand
Strand 2	C	267	269	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	337	first strand
Strand 2	C	340	349	anti-parallel
Strand 3	C	360	366	anti-parallel
Strand 4	C	377	380	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JWU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JWU