Analysis of interatomic Contacts of Structural Units in PDB entry:
8JWY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JWY entry

There is 1 chain in PDB entry 8JWY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3GLN 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8JWY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 34Right-handed alpha
Helix 2
AA2
A
35 38Right-handed 310
Helix 3
AA3
A
39 58Right-handed alpha
Helix 4
AA4
A
58 67Right-handed alpha
Helix 5
AA5
A
73 108Right-handed alpha
Helix 6
AA6
A
111 116Right-handed alpha
Helix 7
AA7
A
117 137Right-handed alpha
Helix 8
AA8
A
138 142Right-handed 310
Helix 9
AA9
A
167 172Right-handed alpha
Helix 10
AB1
A
173 179Right-handed alpha
Helix 11
AB2
A
186 205Right-handed alpha
Helix 12
AB3
A
209 219Right-handed alpha
Helix 13
AB4
A
245 258Right-handed alpha
Helix 14
AB5
A
266 288Right-handed alpha
Helix 15
AB6
A
291 298Right-handed alpha
Helix 16
AB7
A
299 320Right-handed alpha
Helix 17
AB8
A
321 330Right-handed alpha
Helix 18
AB9
A
332 342Right-handed alpha
Helix 19
AC1
A
343 349Right-handed alpha
Helix 20
AC2
A
349 363Right-handed alpha
Helix 21
AC3
A
365 375Right-handed alpha
Helix 22
AC4
A
376 406Right-handed alpha
Helix 23
AC5
A
413 439Right-handed alpha
Helix 24
AC6
A
439 453Right-handed alpha
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There are 2 sheets in PDB entry 8JWY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
164 165anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 226first strand
Strand 2
A
232 235anti-parallel
Strand 3
A
238 241anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il