Analysis of interatomic Contacts of Structural Units in PDB entry:
8JX6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8JX6 entry

There are 2 chains in PDB entry 8JX6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 454
B
 ASP 4ASP 454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8JX6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 8Right-handed 310
Helix 2
AA2
A
9 28Right-handed alpha
Helix 3
AA3
A
45 60Right-handed alpha
Helix 4
AA4
A
70 83Right-handed alpha
Helix 5
AA5
A
98 102Right-handed alpha
Helix 6
AA6
A
144 148Right-handed 310
Helix 7
AA7
A
149 159Right-handed alpha
Helix 8
AA8
A
185 189Right-handed 310
Helix 9
AA9
A
207 223Right-handed alpha
Helix 10
AB1
A
228 234Right-handed 310
Helix 11
AB2
A
248 257Right-handed alpha
Helix 12
AB3
A
269 286Right-handed alpha
Helix 13
AB4
A
357 375Right-handed alpha
Helix 14
AB5
A
378 392Right-handed alpha
Helix 15
AB6
A
406 409Right-handed 310
Helix 16
AB7
A
422 430Right-handed alpha
Helix 17
AB8
A
430 443Right-handed alpha
Helix 18
AB9
B
4 8Right-handed 310
Helix 19
AC1
B
9 28Right-handed alpha
Helix 20
AC2
B
45 60Right-handed alpha
Helix 21
AC3
B
70 84Right-handed alpha
Helix 22
AC4
B
98 102Right-handed alpha
Helix 23
AC5
B
144 148Right-handed 310
Helix 24
AC6
B
149 159Right-handed alpha
Helix 25
AC7
B
185 189Right-handed 310
Helix 26
AC8
B
201 205Right-handed 310
Helix 27
AC9
B
207 223Right-handed alpha
Helix 28
AD1
B
228 234Right-handed 310
Helix 29
AD2
B
248 259Right-handed alpha
Helix 30
AD3
B
269 286Right-handed alpha
Helix 31
AD4
B
357 375Right-handed alpha
Helix 32
AD5
B
378 392Right-handed alpha
Helix 33
AD6
B
406 409Right-handed 310
Helix 34
AD7
B
422 430Right-handed alpha
Helix 35
AD8
B
430 443Right-handed alpha
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There are 10 sheets in PDB entry 8JX6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 97first strand
Strand 2
A
64 68parallel
Strand 3
A
139 142parallel
Strand 4
A
166 171parallel
Strand 5
A
35 40parallel
Strand 6
A
193 197parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
124 127anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 246first strand
Strand 2
A
445 452parallel
Strand 3
A
413 419parallel
Strand 4
A
263 267parallel
Strand 5
A
402 404parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 353first strand
Strand 2
A
332 339anti-parallel
Strand 3
A
317 328anti-parallel
Strand 4
A
296 299anti-parallel
Strand 5
A
397 399anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 304first strand
Strand 2
A
310 312anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 97first strand
Strand 2
B
64 68parallel
Strand 3
B
139 142parallel
Strand 4
B
166 171parallel
Strand 5
B
35 40parallel
Strand 6
B
193 197parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 107first strand
Strand 2
B
124 127anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 245first strand
Strand 2
B
445 452parallel
Strand 3
B
413 419parallel
Strand 4
B
263 267parallel
Strand 5
B
402 404parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 353first strand
Strand 2
B
333 341anti-parallel
Strand 3
B
317 327anti-parallel
Strand 4
B
296 299anti-parallel
Strand 5
B
397 399anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 304first strand
Strand 2
B
310 312anti-parallel
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