Analysis of interatomic Contacts of Structural Units in PDB entry:
8JX9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JX9 entry

There are 3 chains in PDB entry 8JX9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 4055	GLY 4415
B	PRO 1224	PRO 3929
O	UNK 1	UNK 5

There are 36 helices in PDB entry 8JX9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4324	4328	Right-handed 310
Helix 2	AA2	B	1248	1250	Right-handed 310
Helix 3	AA3	B	1260	1264	Right-handed 310
Helix 4	AA4	B	2924	2926	Right-handed 310
Helix 5	AA5	B	2983	2987	Right-handed 310
Helix 6	AA6	B	3009	3013	Right-handed 310
Helix 7	AA7	B	3048	3052	Right-handed 310
Helix 8	AA8	B	3062	3065	Right-handed 310
Helix 9	AA9	B	3066	3071	Right-handed alpha
Helix 10	AB1	B	3091	3095	Right-handed 310
Helix 11	AB2	B	3105	3109	Right-handed 310
Helix 12	AB3	B	3156	3161	Right-handed alpha
Helix 13	AB4	B	3162	3165	Right-handed 310
Helix 14	AB5	B	3460	3464	Right-handed 310
Helix 15	AB6	B	3473	3478	Right-handed 310
Helix 16	AB7	B	3531	3533	Right-handed 310
Helix 17	AB8	B	3569	3573	Right-handed 310
Helix 18	AB9	B	3583	3586	Right-handed 310
Helix 19	AC1	B	3587	3592	Right-handed alpha
Helix 20	AC2	B	3612	3614	Right-handed 310
Helix 21	AC3	B	3628	3635	Right-handed alpha
Helix 22	AC4	B	3653	3655	Right-handed 310
Helix 23	AC5	B	3664	3668	Right-handed 310
Helix 24	AC6	B	3669	3674	Right-handed alpha
Helix 25	AC7	B	3675	3679	Right-handed 310
Helix 26	AC8	B	3698	3700	Right-handed 310
Helix 27	AC9	B	3715	3719	Right-handed 310
Helix 28	AD1	B	3738	3740	Right-handed 310
Helix 29	AD2	B	3750	3754	Right-handed 310
Helix 30	AD3	B	3777	3779	Right-handed 310
Helix 31	AD4	B	3789	3793	Right-handed 310
Helix 32	AD5	B	3816	3818	Right-handed 310
Helix 33	AD6	B	3828	3833	Right-handed alpha
Helix 34	AD7	B	3858	3862	Right-handed 310
Helix 35	AD8	B	3876	3881	Right-handed alpha
Helix 36	AD9	B	3902	3904	Right-handed 310

There are 35 sheets in PDB entry 8JX9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4076	4077	first strand
Strand 2	A	4066	4070	anti-parallel
Strand 3	A	4057	4061	anti-parallel
Strand 4	A	4321	4323	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4086	4092	first strand
Strand 2	A	4100	4107	anti-parallel
Strand 3	A	4116	4123	anti-parallel
Strand 4	A	4136	4137	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4148	4152	first strand
Strand 2	A	4157	4162	anti-parallel
Strand 3	A	4167	4172	anti-parallel
Strand 4	A	4179	4182	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4189	4195	first strand
Strand 2	A	4200	4205	anti-parallel
Strand 3	A	4211	4216	anti-parallel
Strand 4	A	4223	4226	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4236	4239	first strand
Strand 2	A	4245	4248	anti-parallel
Strand 3	A	4255	4259	anti-parallel
Strand 4	A	4267	4271	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4276	4282	first strand
Strand 2	A	4285	4290	anti-parallel
Strand 3	A	4295	4300	anti-parallel
Strand 4	A	4308	4312	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4343	4347	first strand
Strand 2	A	4350	4354	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4390	4393	first strand
Strand 2	A	4399	4402	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1235	1237	first strand
Strand 2	B	1244	1246	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2912	2914	first strand
Strand 2	B	2920	2922	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2955	2956	first strand
Strand 2	B	2967	2968	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3000	3001	first strand
Strand 2	B	3007	3008	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3039	3040	first strand
Strand 2	B	3046	3047	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3127	3130	first strand
Strand 2	B	3135	3138	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3143	3145	first strand
Strand 2	B	3152	3154	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3169	3172	first strand
Strand 2	B	3175	3178	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3184	3186	first strand
Strand 2	B	3193	3195	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3221	3226	first strand
Strand 2	B	3210	3215	anti-parallel
Strand 3	B	3202	3207	anti-parallel
Strand 4	B	3453	3459	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3235	3237	first strand
Strand 2	B	3242	3247	anti-parallel
Strand 3	B	3252	3257	anti-parallel
Strand 4	B	3264	3267	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3274	3280	first strand
Strand 2	B	3285	3290	anti-parallel
Strand 3	B	3295	3300	anti-parallel
Strand 4	B	3307	3310	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3325	3331	first strand
Strand 2	B	3336	3341	anti-parallel
Strand 3	B	3347	3352	anti-parallel
Strand 4	B	3359	3362	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3371	3375	first strand
Strand 2	B	3380	3384	anti-parallel
Strand 3	B	3391	3395	anti-parallel
Strand 4	B	3402	3405	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3412	3418	first strand
Strand 2	B	3421	3426	anti-parallel
Strand 3	B	3431	3436	anti-parallel
Strand 4	B	3444	3448	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3482	3484	first strand
Strand 2	B	3491	3493	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3499	3503	first strand
Strand 2	B	3508	3512	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3518	3520	first strand
Strand 2	B	3527	3529	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3560	3561	first strand
Strand 2	B	3567	3568	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3600	3602	first strand
Strand 2	B	3608	3610	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3641	3643	first strand
Strand 2	B	3649	3651	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3685	3687	first strand
Strand 2	B	3694	3696	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3726	3728	first strand
Strand 2	B	3734	3736	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3765	3767	first strand
Strand 2	B	3773	3775	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3804	3806	first strand
Strand 2	B	3812	3814	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3849	3850	first strand
Strand 2	B	3856	3857	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3890	3892	first strand
Strand 2	B	3898	3900	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JX9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JX9