Analysis of interatomic Contacts of Structural Units in PDB entry:
8JXC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JXC entry

There are 3 chains in PDB entry 8JXC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 186	VAL 2905
G	UNK 1	UNK 6
H	UNK 1	UNK 5

There are 26 helices in PDB entry 8JXC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	211	215	Right-handed 310
Helix 2	AA2	A	238	240	Right-handed 310
Helix 3	AA3	A	310	315	Right-handed alpha
Helix 4	AA4	A	349	353	Right-handed 310
Helix 5	AA5	A	660	664	Right-handed 310
Helix 6	AA6	A	665	669	Right-handed 310
Helix 7	AA7	A	749	751	Right-handed 310
Helix 8	AA8	A	979	983	Right-handed 310
Helix 9	AA9	A	1041	1043	Right-handed 310
Helix 10	AB1	A	1053	1057	Right-handed 310
Helix 11	AB2	A	1081	1085	Right-handed 310
Helix 12	AB3	A	1095	1099	Right-handed 310
Helix 13	AB4	A	1126	1128	Right-handed 310
Helix 14	AB5	A	1138	1142	Right-handed 310
Helix 15	AB6	A	1164	1168	Right-handed 310
Helix 16	AB7	A	1205	1207	Right-handed 310
Helix 17	AB8	A	1246	1250	Right-handed 310
Helix 18	AB9	A	1260	1264	Right-handed 310
Helix 19	AC1	A	1288	1290	Right-handed 310
Helix 20	AC2	A	1300	1305	Right-handed alpha
Helix 21	AC3	A	2717	2719	Right-handed 310
Helix 22	AC4	A	2729	2733	Right-handed 310
Helix 23	AC5	A	2735	2740	Right-handed alpha
Helix 24	AC6	A	2758	2760	Right-handed 310
Helix 25	AC7	A	2798	2800	Right-handed 310
Helix 26	AC8	A	2838	2842	Right-handed 310

There are 34 sheets in PDB entry 8JXC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	189	first strand
Strand 2	A	195	196	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	228	first strand
Strand 2	A	234	236	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	271	first strand
Strand 2	A	278	279	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	323	first strand
Strand 2	A	326	330	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	338	first strand
Strand 2	A	341	346	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	362	first strand
Strand 2	A	369	371	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	379	first strand
Strand 2	A	383	386	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	413	417	first strand
Strand 2	A	403	406	anti-parallel
Strand 3	A	394	398	anti-parallel
Strand 4	A	647	650	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	431	first strand
Strand 2	A	436	441	anti-parallel
Strand 3	A	446	451	anti-parallel
Strand 4	A	458	461	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	471	474	first strand
Strand 2	A	479	484	anti-parallel
Strand 3	A	489	494	anti-parallel
Strand 4	A	500	504	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	517	first strand
Strand 2	A	522	527	anti-parallel
Strand 3	A	536	541	anti-parallel
Strand 4	A	548	551	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	564	first strand
Strand 2	A	569	574	anti-parallel
Strand 3	A	579	584	anti-parallel
Strand 4	A	591	595	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	603	608	first strand
Strand 2	A	612	617	anti-parallel
Strand 3	A	622	627	anti-parallel
Strand 4	A	635	639	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	672	675	first strand
Strand 2	A	686	689	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	694	696	first strand
Strand 2	A	703	705	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	732	735	first strand
Strand 2	A	718	721	anti-parallel
Strand 3	A	708	714	anti-parallel
Strand 4	A	956	963	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	742	748	first strand
Strand 2	A	753	758	anti-parallel
Strand 3	A	764	768	anti-parallel
Strand 4	A	775	778	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	789	791	first strand
Strand 2	A	796	801	anti-parallel
Strand 3	A	806	811	anti-parallel
Strand 4	A	817	821	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	827	833	first strand
Strand 2	A	838	843	anti-parallel
Strand 3	A	849	854	anti-parallel
Strand 4	A	861	864	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	874	876	first strand
Strand 2	A	882	886	anti-parallel
Strand 3	A	893	897	anti-parallel
Strand 4	A	904	905	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	915	921	first strand
Strand 2	A	924	929	anti-parallel
Strand 3	A	934	939	anti-parallel
Strand 4	A	947	951	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	986	990	first strand
Strand 2	A	994	998	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1003	1005	first strand
Strand 2	A	1012	1014	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1029	1031	first strand
Strand 2	A	1037	1039	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1071	1073	first strand
Strand 2	A	1078	1080	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1114	1116	first strand
Strand 2	A	1122	1124	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1155	1156	first strand
Strand 2	A	1162	1163	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1192	1194	first strand
Strand 2	A	1201	1203	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1236	1237	first strand
Strand 2	A	1244	1245	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1276	1278	first strand
Strand 2	A	1284	1286	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2705	2706	first strand
Strand 2	A	2714	2715	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2746	2748	first strand
Strand 2	A	2754	2756	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2786	2788	first strand
Strand 2	A	2794	2796	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2869	2871	first strand
Strand 2	A	2878	2880	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JXC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JXC