Analysis of interatomic Contacts of Structural Units in PDB entry:
8JXD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JXD entry

There are 2 chains in PDB entry 8JXD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 3923	GLY 4415
B	GLU 27	PRO 3835

There are 8 helices in PDB entry 8JXD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3946	3948	Right-handed 310
Helix 2	AA2	A	3958	3962	Right-handed 310
Helix 3	AA3	A	3971	3975	Right-handed 310
Helix 4	AA4	A	4011	4015	Right-handed 310
Helix 5	AA5	B	44	46	Right-handed 310
Helix 6	AA6	B	97	102	Right-handed alpha
Helix 7	AA7	B	3777	3779	Right-handed 310
Helix 8	AA8	B	3816	3818	Right-handed 310

There are 17 sheets in PDB entry 8JXD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3934	3935	first strand
Strand 2	A	3943	3944	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3981	3983	first strand
Strand 2	A	3989	3991	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3997	3999	first strand
Strand 2	A	4007	4009	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4024	4026	first strand
Strand 2	A	4029	4031	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4040	4043	first strand
Strand 2	A	4046	4049	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4075	4077	first strand
Strand 2	A	4066	4070	anti-parallel
Strand 3	A	4057	4061	anti-parallel
Strand 4	A	4321	4323	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4086	4092	first strand
Strand 2	A	4100	4107	anti-parallel
Strand 3	A	4116	4123	anti-parallel
Strand 4	A	4136	4137	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4146	4152	first strand
Strand 2	A	4157	4162	anti-parallel
Strand 3	A	4167	4172	anti-parallel
Strand 4	A	4179	4182	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4189	4195	first strand
Strand 2	A	4200	4205	anti-parallel
Strand 3	A	4211	4216	anti-parallel
Strand 4	A	4223	4226	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4233	4239	first strand
Strand 2	A	4245	4250	anti-parallel
Strand 3	A	4255	4259	anti-parallel
Strand 4	A	4267	4271	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4276	4282	first strand
Strand 2	A	4285	4290	anti-parallel
Strand 3	A	4295	4300	anti-parallel
Strand 4	A	4308	4312	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4343	4347	first strand
Strand 2	A	4350	4354	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4390	4393	first strand
Strand 2	A	4399	4402	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	34	first strand
Strand 2	B	40	42	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	73	first strand
Strand 2	B	80	82	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3765	3767	first strand
Strand 2	B	3773	3775	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3804	3806	first strand
Strand 2	B	3812	3814	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JXD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JXD