Analysis of interatomic Contacts of Structural Units in PDB entry:
8JXF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JXF entry

There are 3 chains in PDB entry 8JXF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLU 56	LEU 127
B	PRO 1224	PRO 3925
O	UNK 1	UNK 5

There are 34 helices in PDB entry 8JXF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	59	73	Right-handed alpha
Helix 2	AA2	C	75	103	Right-handed alpha
Helix 3	AA3	C	108	125	Right-handed alpha
Helix 4	AA4	B	2922	2928	Right-handed 310
Helix 5	AA5	B	2984	2988	Right-handed 310
Helix 6	AA6	B	3011	3013	Right-handed 310
Helix 7	AA7	B	3023	3027	Right-handed 310
Helix 8	AA8	B	3050	3052	Right-handed 310
Helix 9	AA9	B	3062	3066	Right-handed 310
Helix 10	AB1	B	3093	3095	Right-handed 310
Helix 11	AB2	B	3114	3119	Right-handed alpha
Helix 12	AB3	B	3156	3161	Right-handed alpha
Helix 13	AB4	B	3460	3464	Right-handed 310
Helix 14	AB5	B	3473	3478	Right-handed 310
Helix 15	AB6	B	3531	3533	Right-handed 310
Helix 16	AB7	B	3569	3573	Right-handed 310
Helix 17	AB8	B	3583	3586	Right-handed 310
Helix 18	AB9	B	3587	3592	Right-handed alpha
Helix 19	AC1	B	3612	3614	Right-handed 310
Helix 20	AC2	B	3628	3635	Right-handed alpha
Helix 21	AC3	B	3653	3655	Right-handed 310
Helix 22	AC4	B	3669	3674	Right-handed alpha
Helix 23	AC5	B	3675	3679	Right-handed 310
Helix 24	AC6	B	3698	3700	Right-handed 310
Helix 25	AC7	B	3715	3719	Right-handed 310
Helix 26	AC8	B	3738	3740	Right-handed 310
Helix 27	AC9	B	3777	3779	Right-handed 310
Helix 28	AD1	B	3794	3798	Right-handed 310
Helix 29	AD2	B	3816	3818	Right-handed 310
Helix 30	AD3	B	3858	3862	Right-handed 310
Helix 31	AD4	B	3872	3876	Right-handed 310
Helix 32	AD5	B	3877	3881	Right-handed 310
Helix 33	AD6	B	3902	3904	Right-handed 310
Helix 34	AD7	B	3918	3922	Right-handed 310

There are 28 sheets in PDB entry 8JXF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1235	1237	first strand
Strand 2	B	1244	1246	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2869	2871	first strand
Strand 2	B	2878	2880	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2914	2916	first strand
Strand 2	B	2919	2920	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2954	2955	first strand
Strand 2	B	2968	2969	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2999	3001	first strand
Strand 2	B	3007	3009	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3038	3039	first strand
Strand 2	B	3047	3048	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3081	3083	first strand
Strand 2	B	3089	3091	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3128	3130	first strand
Strand 2	B	3135	3137	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3143	3145	first strand
Strand 2	B	3152	3154	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3169	3172	first strand
Strand 2	B	3175	3178	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3184	3186	first strand
Strand 2	B	3193	3195	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3221	3225	first strand
Strand 2	B	3211	3215	anti-parallel
Strand 3	B	3202	3206	anti-parallel
Strand 4	B	3456	3459	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3235	3237	first strand
Strand 2	B	3242	3247	anti-parallel
Strand 3	B	3252	3257	anti-parallel
Strand 4	B	3264	3267	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3274	3280	first strand
Strand 2	B	3285	3290	anti-parallel
Strand 3	B	3295	3300	anti-parallel
Strand 4	B	3307	3310	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3325	3331	first strand
Strand 2	B	3336	3341	anti-parallel
Strand 3	B	3347	3352	anti-parallel
Strand 4	B	3359	3362	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3371	3374	first strand
Strand 2	B	3380	3384	anti-parallel
Strand 3	B	3391	3395	anti-parallel
Strand 4	B	3402	3405	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3412	3418	first strand
Strand 2	B	3421	3426	anti-parallel
Strand 3	B	3432	3436	anti-parallel
Strand 4	B	3444	3447	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3482	3484	first strand
Strand 2	B	3491	3493	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3499	3503	first strand
Strand 2	B	3508	3512	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3518	3520	first strand
Strand 2	B	3527	3529	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3560	3561	first strand
Strand 2	B	3567	3568	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3600	3602	first strand
Strand 2	B	3608	3610	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3641	3643	first strand
Strand 2	B	3649	3651	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3685	3687	first strand
Strand 2	B	3694	3696	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3726	3728	first strand
Strand 2	B	3734	3736	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3765	3767	first strand
Strand 2	B	3773	3775	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3804	3806	first strand
Strand 2	B	3812	3814	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3890	3892	first strand
Strand 2	B	3898	3900	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JXF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JXF