Analysis of interatomic Contacts of Structural Units in PDB entry:
8JXI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8JXI entry

There are 5 chains in PDB entry 8JXI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLU 254	ASN 358
A	LYS 186	PRO 3201
B	ASP 2717	THR 2864
G	UNK 1	UNK 6
H	UNK 1	UNK 5

There are 26 helices in PDB entry 8JXI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	257	269	Right-handed alpha
Helix 2	AA2	C	273	315	Right-handed alpha
Helix 3	AA3	C	316	358	Right-handed alpha
Helix 4	AA4	A	197	201	Right-handed 310
Helix 5	AA5	A	211	215	Right-handed 310
Helix 6	AA6	A	238	240	Right-handed 310
Helix 7	AA7	A	250	254	Right-handed 310
Helix 8	AA8	A	309	313	Right-handed 310
Helix 9	AA9	A	496	498	Right-handed 310
Helix 10	AB1	A	660	669	Right-handed 310
Helix 11	AB2	A	978	983	Right-handed 310
Helix 12	AB3	A	1041	1043	Right-handed 310
Helix 13	AB4	A	1083	1085	Right-handed 310
Helix 14	AB5	A	1126	1128	Right-handed 310
Helix 15	AB6	A	1138	1142	Right-handed 310
Helix 16	AB7	A	1164	1168	Right-handed 310
Helix 17	AB8	A	1178	1182	Right-handed 310
Helix 18	AB9	A	1205	1207	Right-handed 310
Helix 19	AC1	A	1248	1250	Right-handed 310
Helix 20	AC2	A	1260	1264	Right-handed 310
Helix 21	AC3	A	1288	1290	Right-handed 310
Helix 22	AC4	A	1300	1305	Right-handed alpha
Helix 23	AC5	B	2733	2738	Right-handed alpha
Helix 24	AC6	B	2758	2760	Right-handed 310
Helix 25	AC7	B	2770	2774	Right-handed 310
Helix 26	AC8	B	2812	2817	Right-handed alpha

There are 32 sheets in PDB entry 8JXI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	189	first strand
Strand 2	A	195	196	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	228	first strand
Strand 2	A	234	236	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	271	first strand
Strand 2	A	278	280	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	337	first strand
Strand 2	A	345	347	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	364	first strand
Strand 2	A	367	369	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	379	first strand
Strand 2	A	383	386	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	417	first strand
Strand 2	A	403	407	anti-parallel
Strand 3	A	394	398	anti-parallel
Strand 4	A	645	650	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	431	first strand
Strand 2	A	436	441	anti-parallel
Strand 3	A	446	451	anti-parallel
Strand 4	A	458	461	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	468	474	first strand
Strand 2	A	479	484	anti-parallel
Strand 3	A	489	494	anti-parallel
Strand 4	A	501	504	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	516	first strand
Strand 2	A	522	527	anti-parallel
Strand 3	A	536	541	anti-parallel
Strand 4	A	548	551	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	564	first strand
Strand 2	A	569	574	anti-parallel
Strand 3	A	579	584	anti-parallel
Strand 4	A	591	595	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	607	609	first strand
Strand 2	A	612	617	anti-parallel
Strand 3	A	622	627	anti-parallel
Strand 4	A	635	639	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	672	675	first strand
Strand 2	A	686	689	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	694	696	first strand
Strand 2	A	703	705	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	735	736	first strand
Strand 2	A	717	721	anti-parallel
Strand 3	A	708	714	anti-parallel
Strand 4	A	956	963	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	742	748	first strand
Strand 2	A	753	758	anti-parallel
Strand 3	A	763	768	anti-parallel
Strand 4	A	775	778	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	785	791	first strand
Strand 2	A	796	801	anti-parallel
Strand 3	A	806	811	anti-parallel
Strand 4	A	817	821	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	827	833	first strand
Strand 2	A	838	843	anti-parallel
Strand 3	A	849	854	anti-parallel
Strand 4	A	861	864	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	871	877	first strand
Strand 2	A	882	887	anti-parallel
Strand 3	A	893	897	anti-parallel
Strand 4	A	904	905	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	915	921	first strand
Strand 2	A	924	929	anti-parallel
Strand 3	A	934	939	anti-parallel
Strand 4	A	947	950	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	986	990	first strand
Strand 2	A	994	998	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1003	1005	first strand
Strand 2	A	1012	1014	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1029	1031	first strand
Strand 2	A	1037	1039	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1070	1072	first strand
Strand 2	A	1079	1081	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1114	1116	first strand
Strand 2	A	1122	1124	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1155	1157	first strand
Strand 2	A	1161	1163	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1192	1194	first strand
Strand 2	A	1201	1203	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1235	1237	first strand
Strand 2	A	1244	1246	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1276	1278	first strand
Strand 2	A	1284	1286	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3184	3186	first strand
Strand 2	A	3193	3195	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2746	2748	first strand
Strand 2	B	2754	2756	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2829	2830	first strand
Strand 2	B	2833	2836	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8JXI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8JXI